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Undergraduate Publications

One of the most valuable aspects of a Brandeis education is the opportunity to carry out cutting-edge research in collaboration with faculty, graduate students and postdocs. There are many research opportunities in laboratories in the science departments at Brandeis. Many students begin working in labs as early as their first semester, while others may start as juniors. Often, the research leads up to publication of a Senior Honors Thesis. Since 2003, Brandeis undergraduates have been co-authors on approximately 400 peer-reviewed research publications in scientific journals.

Names of undergraduate students from Brandeis are indicated below in bold face.

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2024

Wise DL, Greene SB, Escobedo-Lozoya Y, Van Hooser SD, Nelson SB. Progressive circuit hyperexcitability in mouse neocortical slice cultures with increasing duration of activity silencing. eNeuro. 2024 Apr 23:ENEURO.0362-23.2024.
Jiaqi Guo, Annabelle Chang, Bing Xu. Auto-Cleaving Bond for Better Drugs. ChemMedChem. 2024 Mar 29:e202400130.
Yi M, Ashton-Rickardt G, Tan W, Liu Z, He H, Hsieh JT, Xu B. Accelerating Cellular Uptake with Unnatural Amino Acid for Inhibiting Immunosuppressive Cancer Cells. Chemistry. 2024:e202400691.
Li R, Bulucu D, Chou T, Akcora P. Enhanced Ion Conductivity in a Poly (ionic liquid)-Grafted Nanoparticle-Based Single-Ion Conductor. Macromolecules, 2024.
Chen Y, Mateski J, Gerace L, Wheeler J, Burl J, Prakash B, Svedin C, Amrick R, Adams BD. Non-coding RNAs and neuroinflammation: implications for neurological disorders. Exp Biol Med (Maywood). 2024 Feb 28;249:10120. doi: 10.3389/ebm.2024.10120. eCollection 2024.
Adel SS, Pranske ZJ, Kowalski TF, Kanzler N, Ray R, Carmona C, Paradis S. Plexin-B1 and Plexin-B2 play non-redundant roles in GABAergic synapse formation. Mol Cell Neurosci. 2024 Feb 6:128:103920. doi: 10.1016/j.mcn.2024.
Bottorff J, Padgett S, Turrigiano GG. Basal forebrain cholinergic activity is necessary for upward firing rate homeostasis in the rodent visual cortex. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(1):e2317987121. doi: 10.1073/pnas.2317987121.
Ma S, Li Y, Liu F, Wang X, Qin Z, Wang L, Yang J, Wang L, Yang W, Wang N, You Y, Wu Q, Gong C. Hierarchical-unlocking virus-esque NanoCRISPR precisely disrupts autocrine and paracrine pathway of VEGF for tumor inhibition and antiangiogenesis. Journal of Controlled Release. Volume 366, February 2024, Pages 505-518.
Sapede E, Sugawara N, Tyers RG, Nakajima Y, Afreen MF, Romero Escobar J, Haber JE. Nonhomologous tails direct heteroduplex rejection and mismatch correction during single-strand annealing in Saccharomyces cerevisiae. Plos Genet. 2024;20(2):e1010527. doi: 10.1371/journal.pgen.1010527.
Blanc B, Agyapong JN, Hunter I, Galas JC, Fernandez-Nieves A, Fraden S. Collective chemomechanical oscillations in active hydrogels. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(6):e2313258121. doi: 10.1073/pnas.2313258121.

2023

Gonzalez Rodriguez S, Wirshing ACE, Goodman AL, and Goode BL (2023). Cytosolic concentrations of actin binding proteins and the implications for in vivo F-actin turnover. J. Cell Biol. 222(12): e202306036.
McInally SG, Reading AJB, Rosario A, Jelenkovic PR, Goode BL, and Kondev J. (2023). Length control emerges from cytoskeletal network geometry. Biorxiv. doi.org/10.1101/2023.11.28.569063.
O’Leary RM, Amichetti NM, Brown Z, Kinney AJ, & Wingfield, A. (2023). Congruen prosody reduces cognitive effort in memory for spoken sentences: A pupillometric study with young and older adults. Experimental Aging Research. 2023 Dec 7:1-24.
Stacy AK, Schneider NA, Gilman NK, Van Hooser SD. Impact of Acute Visual Experience on Development of LGN Receptive Fields in the Ferret. J Neurosci. 2023 May 10;43(19):3495-3508.
Bottorff J, Padgett S, and Turrigiano GG (2023) Basal Forebrain Cholinergic Activity is Necessary for Upward Firing Rate Homeostasis in Rodent Visual Cortex. PNAS, December 26, 2023. 121 (1) e2317987121.
Tenenbaum, Debora, Koe Inlow, Larry J. Friedman, Anthony Cai, Jeff Gelles, and Jane Kondev. RNA Polymerase Sliding on DNA Can Couple the Transcription of Nearby Bacterial Operons. Proceedings of the National Academy of Sciences 120, no. 30 (2023).
Alejandra Gonzalez, Qianfeng Qiu, Junichi Usuba, Joshua Wan, and Grace G. D. Han. Photoinduced Solid–Liquid Phase Transition and Energy Storage Enabled by the Design of Linked Double Photoswitches. ACS Mater. Au 2023.
Alaina M. Richard, Nathan R. Wong, Kurt Harris, Reethy Sundar, Emily E. Scott & Thomas C. Pochapsky. Selective steroidogenic cytochrome P450 haem iron ligation by steroid-derived isonitriles. Communications Chemistry, Volume 6, Article number: 183 (2023)
Rubenstein RI, Lalwala M, Devane K, Koya B, Kiani B, Weaver AA. Comparison of morphing techniques to develop subject-specific finite element models of vertebrae. Comput Methods Biomech Biomed Engin. 2023 Sep;26(11):1288-1293. doi: 10.1080/10255842.2022.2113994. (2023).
Wu SJ, Sevier E, Dwivedi D, Saldi GA, Hairston A, Yu S, Abbott L, Choi DH, Sherer M, Qiu Y, Shinde A, Lenahan M, Rizzo D, Xu Q, Barrera I, Kumar V, Marrero G, Prönneke A, Huang S, Kullander K, Stafford DA, Macosko E, Chen F, Rudy B, Fishell G. Cortical somatostatin interneuron subtypes form cell-type-specific circuits. Neuron. 2023 Sep 6;111(17):2675-2692.e9.
Cho S, Usuba J, Chakraborty S, Li X, Han GGD. Solid-state photon energy storage via reversible [2+2] cycloaddition of donor-acceptor styrylpyrylium system. Chem. 2023.
Del Signore SJ, Mitzner MG, Silveira AM, Fai TG, Rodal AA. An approach for quantitative mapping of synaptic periactive zone architecture and organization. Molecular biology of the cell. 2023;34(6):ar51.
Abruzzi K, Ratner C, Rosbash M. Comparison of TRIBE and STAMP for identifying targets of RNA binding proteins in human and Drosophila cells. RNA. 2023.
Laursen WJ, Busby R, Sarkissian T, Chang EC, Garrity PA. DMKPs provide a generalizable strategy for studying genes required for reproduction or viability in non-traditional model organisms. Genetics. iyad057. 2023.
Motif-Based Graph Representation Learning with Application to Chemical Molecules. Wang Y, Chen S, Chen G, Shurberg E, Liu H, Hong, P. Informatics 2023, 10 (1), 8.
Salnikov L, Goldberg S, Rijhwani H, Shi Y, Pinsky E. The RNA-Seq data analysis shows how the ontogenesis defines aging. Front Aging. 2023;4:1143334.
Harris N, Bates SG, Zhuang Z, Bernstein M, Stonemetz JM, Hill TJ, Yu YV, Calarco JA, Sengupta P. Molecular encoding of stimulus features in a single sensory neuron type enables neuronal and behavioral plasticity. Curr Biol. 2023 Mar 24;S0960-9822(23)00263-4.
Valakh V, Wise D, Zhu XA, Sha M, Fok J, Van Hooser SD, Schectman R, Cepeda I, Kirk R, O'Toole SM, Nelson SB. A transcriptional constraint mechanism limits the homeostatic response to activity deprivation in mammalian neocortex. eLife. 2023;12.
Laursen WJ, Budelli G, Tang R, Chang EC, Busby R, Shankar S, Gerber R, Greppi C, Albuquerque R, Garrity PA. Humidity sensors that alert mosquitoes to nearby hosts and egg-laying sites. Neuron. 2023 Jan 5:S0896-6273(22)01122-9.
Nathan R. Wong, Reethy Sundar, Sophia Kazanis, Jeetayu Biswas, Thomas C. Pochapsky. Conformational heterogeneity suggests multiple substrate binding modes in CYP106A2. Journal of Inorganic Biochemistry. Jan 19 2023.
Wirshing ACE, Gonzalez Rodriguez S, Goode BL. Evolutionary tuning of barbed end competition allows simultaneous construction of architecturally distinct actin structures. J Cell Biol (2023) 222 (4): e202209105.

2022

Li J, Song X, Li P, Herzfeld J. A Carbon Is a Carbon Is a Carbon: Orbital-Free Simulations of Hydrocarbon Chemistry without Resort to Atom Types. J Phys Chem A. 2022.
Headrick M, Held J, Herman J. Crossing Versus Locking: Bit Threads and Continuum Multiflows. Communications in Mathematical Physics. 2022; 396, 265–313 .
Rue MCP, Bass-Thomas N, Iyengar P, Scaria L and Marder E. Localization of chemical synapses and modulatory release sites in the cardiac ganglion of the crab, Cancer borealis. J. Comp. Neurol. 2022; 530:2954–2965. DOI: 10.1002/cne.25385.
Del Signore SJ, Mitzner MG, Silveira AM, Fai TG, Rodal AA. Quantitative mapping of synaptic periactive zone architecture and organization. BioRxiv doi: 10.1101/2022.06.16.496425
Blanchette CR*, Scalera AL*, Harris KP, Zhao Z, Dresselhaus EC, Koles K, Yeh A, Apiki JK, Stewart BA, Rodal AA. Local regulation of extracellular vesicle traffic by the synaptic endocytic machinery. (*co-first authors) J Cell Biol. 2022; 221(5):e202112094.
Tan W, Zhang Q, Quiñones-Frías MC, Hsu AY, Zhang Y, Rodal A, Hong P, Luo HR, and Xu B. Enzyme-Responsive Peptide Thioesters for Targeting Golgi Apparatus. J. Am. Chem. Soc. 2022, 144, 15, 6709–6713. April 11, 2022. https://doi.org/10.1021/jacs.2c02238
García Murillo D, Zhao Y, Rogovin OS, Zhang K, Hu AW, Kim MR, Chen S, Wang Z, Keeley ZC, Shin DI, Suárez Casanova VM, Zhu Y, Martin L, Papaemmanouil O, Van Hooser SD. NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments. eNeuro. 2022 Feb 9;9(1):ENEURO.0073-21.2022. doi: 10.1523/ENEURO.0073-21.2022. Print 2022 Jan-Feb.
Cao AS, Van Hooser SD. Paired Feed-Forward Excitation With Delayed Inhibition Allows High Frequency Computations Across Brain Regions. Front Neural Circuits. 2022 Feb 3;15:803065. doi: 10.3389/fncir.2021.803065. eCollection 2021.
Li X, Cho S, and Han GGD. Light-Responsive Solid–Solid Phase Change Materials for Photon and Thermal Energy Storage. ACS Materials Au 0, 0, pp. September 30, 2022. DOI: 10.1021/acsmaterialsau.2c00055.
Hagan JT, Gonzalez A, Shi Y, Han GGD, and Dwyer JR. Photoswitchable Binary Nanopore Conductance and Selective Electronic Detection of Single Biomolecules under Wavelength and Voltage Polarity Control. ACS Nano 2022, 16, 4, 5537–5544. March 14, 2022. doi.org/10.1021/acsnano.1c10039
Feijão T, Marques B, Silva RD, Carvalho C, Sobral D, Matos R, Tan T, Pereira A, Morais-de-Sá E, Maiato H, DeLuca SZ, Martinho RG. Polycomb group (PcG) proteins prevent the assembly of abnormal synaptonemal complex structures during meiosis. Proc Natl Acad Sci U S A. 2022 Oct 18;119(42):e2204701119.
Sun S, He Z, Jiang P, Baral R, Pandelia ME. Metal Dependence and Functional Diversity of Type I Cas3 Nucleases. Biochemistry. 2022 Feb 21. doi: 10.1021/acs.biochem.1c00779.
Wu J, Zhang C, Liu Z, Zhang E, Wilson S, Zhang C. GraphBERT: Bridging Graph and Text for Malicious Behavior Detection on Social Media. IEEE International Conference on Data Mining, 2022.
Hobin M, Dorfman K, Adel M, Rivera-Rodriguez EJ, Kuklin EA, Ma D, Griffith LC. The Drosophila microRNA bantam regulates excitability in adult mushroom body output neurons to promote early night sleep. iScience. 2022;25(9):104874.
Rigal J, Martin Anduaga A, Bitman E, Rivellese E, Kadener S, Marr MT 2nd. Artificially stimulating retrotransposon activity increases mortality and accelerates a subset of aging phenotypes in Drosophila. Elife. 2022 Aug 18;11:e80169. doi: 10.7554/eLife.80169.
Rubenstein RI, Lalwala M, Devane K, Koya B, Kiani B, Weaver AA. Comparison of morphing techniques to develop subject-specific finite element models of vertebrae. Comput Methods Biomech Biomed Engin. 2022 Aug 23;1-6.
Hussain B, Kasinath V, Ashton-Rickardt GP, Clancy T, Uchimura K, Tsokos G, Abdi R. High endothelial venules as potential gateways for therapeutics. Trends Immunol. 2022.
Alvarez G, Le T, Wong N, Echave J, Pochapsky TC, Asciutto EK. Hydroxylation Regiochemistry Is Robust to Active Site Mutations in Cytochrome P450cam (CYP101A1). Biochemistry. 2022.
Gao Z, Wang J, Yu W, Bai H, Lv F, Huang Y. Bacteria-mediated in-situ polymerization of peptide-modified acrylamide for enhancing antimicrobial activity. Chem Commun. 2022.
Schlichting M, Richhariya S, Herndon N, Ma D, Xin J, Lenh W, Abruzzi K, Rosbash M. Dopamine and GPCR-mediated modulation of DN1 clock neurons gates the circadian timing of sleep. Proc Natl Acad Sci USA. 2022;119(34):e2206066119.
Dolnik M, Konow C, Somberg NH, Epstein IR. Effect of obstructions on growing Turing patterns. Chaos. 2022;32(7):073127.
Chen K, Fan N, Huang H, Jiang X, Qin S, Xiao W, Zheng Q, Zhang Y, Duan X, Qin Z, Liu Y, Zeng J, Wei Y, Song X. mRNA Vaccines Against SARS-CoV-2 Variants Delivered by Lipid Nanoparticles Based on Novel Ionizable Lipids. Adv Funct Mater. 2022:2204692. PMCID: PMC9349794.
Tai J, Forrester J, Sekuler R. Costs and benefits of audiovisual interactions. Perception. 2022:3010066221111501.
Sun S, Wang R, Pandelia ME. Vibrio cholerae V-cGAP3 Is an HD-GYP Phosphodiesterase with a Metal Tunable Substrate Selectivity. Biochemistry. July 28, 2022.
Stone BT, Lin JY, Mahmood A, Sanford AJ, Katz DB. LiCl-induced sickness modulates rat gustatory cortical responses. PLoS Biol. 2022;20(7):e3001537.
Chen N, Zhang Y, Adel M, Kuklin EA, Reed ML, Mardovin JD, Bakthavachalu B, VijayRaghavan K, Ramaswami M, Griffith LC. Local translation provides the asymmetric distribution of CaMKII required for associative memory formation. Curr Biol. 2022.
Langton M, Appell M, Koob J, Pandelia ME. Domain Fusion of Two Oxygenases Affords Organophosphonate Degradation in Pathogenic Fungi. Biochemistry. 2022: 61, 11, 956–962.
Brickman S, Saltzman LY, Bistricky SL, & Wright EJ. (2022, in press). Predicting profiles of posttrauma adaptation in first responders and civilians after the 2013 Boston Marathon bombings: The role of distress, growth, and emotion regulation. Journal of Emergency Management.
Groves Kuhnle C, Grimes M, Suarez Casanova VM, Turrigiano GG, Van Hooser SD. Juvenile Shank3 KO mice adopt distinct hunting strategies during prey capture learning. eNeuro. 2022.
Yi L, Sekuler R. Audiovisual interaction with rate-varying signals. Iperception. 2022;13(6):20416695221116653. PMCID: PMC9716610.

2021

Modi G, Marqus GM, Vippila MR, Gollpalli DR, Kim Y, Manna AC, Shibin C, Maltseva N, Wang X, Cullinane RT, Zhang Y, Kotler JLM, Kuzmic P, Zhang M, Lawson AP, Joachimiak A, Cheung A, Snider BB, Rothstein DM, Cuny GD, Hedstrom, L. The enzymatic activity of inosine 5’-monophosphate dehydrogenase may not be a vulnerable target for Staphylococcus aureus infections. ACS Infect. Dis. 7, 3062-3076 (2021).
Nhung Pham, Zhenxin Yan, Yang Yu, Mosammat Faria Afreen, Anna Malkova, James E Haber, Grzegorz Ira. Mechanisms restraining break-induced replication at two-ended DNA double-strand breaks. EMBO J. 2021 May 17;40(10):e104847. doi: 10.15252/embj.2020104847.
Charles Golden, Andrew K. Scherer, Whittaker Schroder, Timothy Murtha, Shanti Morell-Hart, Juan Carlos Fernandez Diaz, Socorro del Pilar Jiménez Álvarez, Omar Alcover Firpi, Mark Agostini, Alexandra Bazarsky, Morgan Clark, G. Van Kollias III, Mallory Matsumoto, Alejandra Roche Recinos, Joshua Schnell, Bethany Whitlock. Airborne Lidar Survey, Density-Based Clustering, and Ancient Maya Settlement in the Upper Usumacinta River Region of Mexico and Guatemala. Remote Sens. 2021, 13(20), 4109; https://doi.org/10.3390/rs13204109
Nechipurenko I, Lavrentyeva S, Sengupta P. GRDN-1/girdin regulates dendrite morphogenesis and cilium position in two specialized sensory neuron types in C. elegans. Dev Biol. 2021.
Rahman F, Nanu R, Schneider NA, Katz D, Lisman J, Pi HJ. Optogenetic perturbation of projections from thalamic nucleus reuniens to hippocampus disrupts spatial working memory retrieval more than encoding. Neurobiol Learn Mem. 2021;179:107396.
Mohajerani F, Sayer E, Neil C, Inlow K, Hagan MF. Mechanisms of Scaffold-Mediated Microcompartment Assembly and Size Control. ACS nano. 2021.
Cooper DL, Harada T, Tamazi S, Ferrazzoli AE, Lovett ST. The Role of Replication Clamp-Loader Protein HolC of Escherichia coli in Overcoming Replication/Transcription Conflicts. mBio. 2021;12(2).
Shi Y, Gerkman MA, Qiu Q, Zhang S, Han GGD. Sunlight-activated phase change materials for controlled heat storage and triggered release. Journal of Materials Chemistry A. 2021.
Ayasse ND, Hodson AJ, Wingfield A. The Principle of Least Effort and Comprehension of Spoken Sentences by Younger and Older Adults. Frontiers in psychology. 2021;12. PMCID: PMC8007979.
Du H,Chen F, Liu H, Hong P. Network-based Virus-Host Interaction Prediction with Application to SARS-CoV-2. Patterns. 2021.
He H, Lin X, Wu D, Wang J, Guo J, Green DR, Zhang H, Xu B. Enzymatic Noncovalent Synthesis for Mitochondrial Genetic Engineering of Cancer Cells. Cell Rep Phys Sci. 2020;1(12). PMCID: PMC7839975.
Wang Y, Wang L, Lin S, Cong W, Xue J, Ochieng W. Effect of Working Experience on Air Traffic Controller Eye Movement. Engineering. 2021. doi: 10.1016/j.eng.2020.11.006.
Bandyopadhyay S, Douglass J, Kapell S, Khan N, Feitosa-Suntheimer F, Klein JA, Temple J, Brown-Culbertson J, Tavares AH, Saeed M, Lau NC. DNA templates with blocked long 3' end single-stranded overhangs (BL3SSO) promote bona fide Cas9-stimulated homology-directed repair of long transgenes into endogenous gene loci. G3 (Bethesda) 2021 May 14;jkab169.
Porter NA, Fields EC, Moore IL, Gutchess A. Late Frontal Positivity Effects in Self-Referential Memory: Unique to the Self? Soc Neurosci. 2021.
Konow C, Li Z, Shepherd S, Bullara D, Epstein IR. Influence of survival, promotion, and growth on pattern formation in zebrafish skin. Scientific reports. 2021;11(1):9864. PMCID: PMC8110552.
He H, Guo J, Xu J, Wang J, Liu S, Xu B. Dynamic Continuum of Nanoscale Peptide Assemblies Facilitates Endocytosis and Endosomal Escape. Nano Lett. 2021.
Walsh RB, Dresselhaus EC, Becalska AN, Zunitch MJ, Blanchette CR, Scalera AL, Lemos T, Lee SM, Apiki J, Wang S, Isaac B, Yeh A, Koles K, Rodal AA. Opposing functions for retromer and Rab11 in extracellular vesicle traffic at presynaptic terminals. Journal of Cell Biology. 2021;220(8).
Wiggin TD, Hsiao Y, Liu JB, Huber R, Griffith LC. Rest Is Required to Learn an Appetitively-Reinforced Operant Task in Drosophila. Frontiers in behavioral neuroscience. 2021;15.
Kohli P, Du X, Shen H. Graphical models for mean and covariance of multivariate longitudinal data. Statistics in Medicine. 2021. doi: 10.1002/sim.9106.
Qiu Q, Shi Y, Han GGD. Solar energy conversion and storage by photoswitchable organic materials in solution, liquid, solid, and changing phases. Journal of Materials Chemistry C. 2021.
Del Signore SJ, Kelley CF, Messelaar EM, Lemos T, Marchan MF, Ermanoska B, Mund M, Fai TG, Kaksonen M, Rodal AA. An autoinhibitory clamp of actin assembly constrains and directs synaptic endocytosis. eLife. 2021;10.
Villalonga MB, Sussman RF, Sekuler R. Perceptual timing precision with vibrotactile, auditory, and multisensory stimuli. Atten Percept Psychophys. 2021;83(5):2267-80.
Sutera VA, Sass TH, Leonard SE, Wu L, Glass DJ, Giordano GG, Zur Y, Lovett ST. Genetic analysis of DinG-family helicase YoaA and its interaction with replication clamp-loader protein HolC in E. coli. J Bacteriol. 2021:JB0022821.
Reikersdorfer KN, Stacy AK, Bressler DA, Hayashi LS, Hengen KB, Van Hooser SD. Construction and Implementation of Carbon Fiber Microelectrode Arrays for Chronic and Acute In Vivo Recordings. Journal of Visualized Experiments. 2021(174). doi: 10.3791/62760.
Sussman R, Sekuler R, Villalonga M, Snyder H. Flanker task under (perceived) time pressure. Journal of Vision. 2021;21(9).
Ramsey DJ, McCullum JC, Steinberger EE, Zhang Y, Alwreikat AM, Cooper ML, Roh S, Cotran PR. Intraocular pressure decreases in eyes with glaucoma-related diagnoses after conversion to aflibercept for treatment-resistant age-related macular degeneration. Eye (Lond). 2021
Lubin JH, Zardecki C, Dolan EM, Lu C, Shen Z, Dutta S, Westbrook JD, Hudson BP, Goodsell DS, Williams JK, Voigt M, Sarma V, Xie L, Venkatachalam T, Arnold S, Alfaro Alvarado LH, Catalfano K, Khan A, McCarthy E, Staggers S, Tinsley B, Trudeau A, Singh J, Whitmore L, Zheng H, Benedek M, Currier J, Dresel M, Duvvuru A, Dyszel B, Fingar E, Hennen EM, Kirsch M, Khan AA, Labrie-Cleary C, Laporte S, Lenkeit E, Martin K, Orellana M, Ortiz-Alvarez de la Campa M, Paredes I, Wheeler B, Rupert A, Sam A, See K, Soto Zapata S, Craig PA, Hall BL, Jiang J, Koeppe JR, Mills SA, Pikaart MJ, Roberts R, Bromberg Y, Hoyer JS, Duffy S, Tischfield J, Ruiz FX, Arnold E, Baum J, Sandberg J, Brannigan G, Khare SD, Burley SK. Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first 6 months of the COVID-19 pandemic. Proteins. 2021.

2020

Klaric JA, Glass DJ, Perr EL, Reuven AD, Towne MJ, Lovett ST. DNA damage-signaling, homologous recombination and genetic mutation induced by 5-azacytidine and DNA-protein crosslinks in Escherichia coli. Mutat Res. 2021;822:111742.
Li T, Li Z, Deans EE, Mittler E, Liu M, Chandran K, Ivanovic T. The shape of pleomorphic virions determines resistance to cell-entry pressure. Nat Microbiol. 2021.
Roy A, Wang S, Meschede-Krasa B, Breffle J, Van Hooser SD. An early phase of instructive plasticity before the typical onset of sensory experience. Nat Commun. 2020;11(1):11.
Donelson NC, Dixit R, Pichardo-Casas I, Chiu EY, Ohman RT, Slawson JB, Klein M, Fulga TA, Van Vactor D, Griffith LC. MicroRNAs Regulate Multiple Aspects of Locomotor Behavior in Drosophila. G3 (Bethesda). 2020;10(1):43-55.
Greppi C (*), Laursen WJ (*), Budelli G, Chang EC, Daniels AM, van Giesen L, Smidler AL, Catteruccia F, Garrity PA. Mosquito heat seeking is driven by an ancestral cooling receptor. Science. 2020;367(6478):681-4.
Enes J, Haburcak M, Sona S, Gerard N, Mitchell AC, Fu W, Birren SJ. Satellite glial cells modulate cholinergic transmission between sympathetic neurons. PLoS One. 2020;15(2):e0218643.
Lowensohn J, Hensley A, Perlow-Zelman M, Rogers WB. Self-assembly and crystallization of DNA-coated colloids via linker-encoded interactions. Langmuir. 2020.
Hadzipasic A, Wilson C, Nguyen V, Kern N, Kim C, Pitsawong W, Villali J, Zheng Y, Kern D. Ancient origins of allosteric activation in a Ser-Thr kinase. Science. 2020;367(6480):912-7.
He H, Guo J, Lin X, Xu B. Enzyme-Instructed Assemblies Enable Mitochondria Localization of Histone H2B in Cancer Cells. Angew Chem Int Ed Engl. 2020.
Gonzalez A, Kengmana ES, Fonseca MV, Han GGD. Solid-state photoswitching molecules: structural design for isomerization in condensed phase. Materials Today Advances. 2020;6.
Tatavarty V, Torrado Pacheco A, Groves Kuhnle C, Lin H, Koundinya P, Miska NJ, Hengen KB, Wagner FF, Van Hooser SD, Turrigiano GG. Autism-Associated Shank3 Is Essential for Homeostatic Compensation in Rodent V1. Neuron. 2020.
Klaric JA, Perr EL, Lovett ST. Identifying Small Molecules That Promote Quasipalindrome-Associated Template-Switch Mutations in Escherichia coli. G3 (Bethesda). 2020.
Gerkman MA (*), Gibson RSL (*), Calbo J, Shi Y, Fuchter MJ, Han GGD. Arylazopyrazoles for Long-Term Thermal Energy Storage and Optically-Triggered Heat Release below 0 degrees C. J Am Chem Soc. 2020.
He LS (*), Rue MCP (*), Morozova EO (*), Powell DJ, James EJ, Kar M, Marder E. Rapid adaptation to Elevated Extracellular Potassium in the Pyloric Circuit of the Crab, Cancer borealis. J Neurophysiol. 2020.
Li X, Lee JK, Lu Y, Gerkman MA, Kengmana ES, Fonseca MV, Warner JH, Han GGD. Precursor Design for High Density Single Pt Atom Sites on MoS2: Enhanced Stability at Elevated Temperatures and Reduced 3D Clustering. Chem Mater. 2020.
He H, Liu S, Wu D, Xu B. Enzymatically-Formed Peptide Assemblies Sequestrate Proteins and Relocate Inhibitors for Selectively Killing Cancer Cells. Angew Chem Int Ed Engl. 2020.
Rychik N, Fassett-Carman A, Snyder HR. Dependent Stress Mediates the Relation Between ADHD Symptoms and Depression. J Atten Disord. 020:1087054720925900.
Lowey B, Whiteley AT, Keszei AFA, Morehouse BR, Mathews IT, Antine SP, Cabrera VJ, Kashin D, Niemann P, Jain M, Schwede F, Mekalanos JJ, Shao S, Lee ASY, Kranzusch PJ. CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection. Cell. 2020.
Herzog JJ, Xu W, Deshpande M, Rahman R, Suib H, Rodal AA, Rosbash M, Paradis S. TDP-43 dysfunction restricts dendritic complexity by inhibiting CREB activation and altering gene expression. Proc Natl Acad Sci U S A. 2020;117(21):11760-9.
Amado S, Snyder HR, Gutchess A. Mind the Gap: The Relation Between Identity Gaps and Depression Symptoms in Cultural Adaptation. Frontiers in psychology. 2020;11:1156. PMCID: PMC7289985.
Schreier HMC, Kuras YI, McInnis CM, Thoma MV, St Pierre DG, Hanlin L, Chen X, Wang D, Goldblatt D, Rohleder N. Childhood Physical Neglect Is Associated With Exaggerated Systemic and Intracellular Inflammatory Responses to Repeated Psychosocial Stress in Adulthood. Front Psychiatry. 2020;11:504. PMCID:PMC7290130.
Richards SEV, Moore AR, Nam AY, Saxena S, Paradis S, Van Hooser SD. Experience-dependent development of dendritic arbors in mouse visual cortex. J Neurosci.15 July 2020.
Balakrishnan M, Yu SF, Chin SM, Soffar DB, Windner SE, Goode BL, Baylies MK. Cofilin Loss in Drosophila Muscles Contributes to Muscle Weakness through Defective Sarcomerogenesis during Muscle Growth. Cell reports. 2020;32(3):107893.
Roy A, Osik JJ, Meschede-Krasa B, Alford WT, Leman DP, Van Hooser SD. Synaptic and intrinsic mechanisms underlying development of cortical direction selectivity. eLife. 2020;9.
Levitan D, Liu C, Yang T, Shima Y, Lin JY, Wachutka J, Marrero Y, Ali Marandi Ghoddousi R, da Veiga Beltrame E, Richter TA, Katz DB, Nelson SB. Deletion of Stk11 and Fos in mouse BLA projection neurons alters intrinsic excitability and impairs formation of long-term aversive memory. eLife. 2020;9.
Gutsell JN, Simon JC, Jiang Y. Perspective taking reduces group biases in sensorimotor resonance. Cortex. 2020;131:42-53.
Matos JO, Kumar RP, Ma AC, Patterson M, Krauss IJ, Oprian DD. Mechanism Underlying Anti-Markovnikov Addition in the Reaction of Pentalenene Synthase. Biochemistry. 2020.
Clark EA, Rutlin M, Capano L, Aviles S, Saadon JR, Taneja P, Zhang Q, Bullis JB, Lauer T, Myers E, Schulmann A, Forrest D, Nelson SB. Cortical RORbeta is required for layer 4 transcriptional identity and barrel integrity. eLife. 2020;9.
Ng TSC, Putta N, Kwatra NS, Drubach LA, Rosen R, Fahey FH, Flores A, Nurko S, Voss SD. Pediatric Solid Gastric Emptying Scintigraphy: Normative Value Guidelines and Nonstandard Meal Alternatives. Am J Gastroenterol. 2020.
Kengmana ES, Lee JK, Li X, Warner JH, Han GGD. Self-Assembly of Bowlic Supramolecules on Graphene Imaged at the Individual Molecular Level using Heavy Atom Tagging. Small. 2020:e2002860.
Langton M, Sun S, Ueda C, Markey M, Chen J, Paddy I, Jiang P, Chin N, Milne A, Pandelia M-E. The HD-Domain Metalloprotein Superfamily: An Apparent Common Protein Scaffold with Diverse Chemistries. Catalysts. 2020;10(10).
Gallagher DN, Pham N, Tsai AM, Janto AN, Choi J, Ira G, Haber JE. A Rad51-independent pathway promotes single-strand template repair in gene editing. Plos Genet. 2020;16(10):e1008689.
Flyer-Adams JG, Rivera-Rodriguez EJ, Yu J, Mardovin JD, Reed ML, Griffith LC. Regulation of olfactory associative memory by the circadian clock output signal Pigment-dispersing factor (PDF). J Neurosci. 2020.
Liu X, Garber A, Ryan J, Deshpande A, Ringe D, Pochapsky TC. A Model for the Solution Structure of Human Fe(II)-Bound Acireductone Dioxygenase and Interactions with the Regulatory Domain of Matrix Metalloproteinase I (MMP-I). Biochemistry. 2020.
Harris MT, Ho TC, Fruchtman H, Garin ME, Kubatin V, Lu T, Xue L, Marr MT. Complete Genome Sequences of Two Vibrio natriegens Bacteriophages. Microbiology Resource Announcements. 2020;9(45).
Lamper AM, Fleming RH, Ladd KM, Lee ASY. A phosphorylation-regulated eIF3d translation switch mediates cellular adaptation to metabolic stress. Science. 2020;370(6518):853-6.
Zhou Z, Joshi C, Liu R, Norton MM, Lemma L, Dogic Z, Hagan MF, Fraden S, Hong P. Machine learning forecasting of active nematics. Soft Matter. 2020.
Sheehy J, Hunter I, Moustaka ME, Aghvami SA, Fahmy Y, Fraden S. Impact of PDMS-Based Microfluidics on Belousov-Zhabotinsky Chemical Oscillators. J Phys Chem B. 2020;124(51):11690-8.

2019

Kushinsky D, Morozova EO, Marder E. In vivo effects of temperature on the heart and pyloric rhythms in the crab, Cancer borealis. J Exp Biol. 2019.
Blankenship ML, Grigorova M, Katz DB, Maier JX. Retronasal Odor Perception Requires Taste Cortex, but Orthonasal Does Not. Curr Biol. 2019;29(1):62-9 e3
Wang J, Zhou J, He H, Wu D, Du X, Xu B. Cell-compatible Nanoprobes for Imaging Intracellular Phosphatase Activities. Chembiochem : a European journal of chemical biology. 2019;20(4):526-31.
Rajab TK, Beyene MW, Yazdchi F, Menard MT. Aortic Aneurysm Eroding into the Spine. Aorta (Stamford). 2019.
Yu R, Kim Y, Maltseva N, Braunstein P, Joachimiak A, Hedstrom L. Oxanosine monophosphate is a covalent inhibitor of inosine 5′-monophosphate dehydrogenase. Chem Res Toxicol. 2019.
Herzog LE, Pascual LM, Scott SJ, Mathieson ER, Katz DB, Jadhav SP. Interaction of taste and place coding in the hippocampus. The Journal of Neuroscience. 2019.
Waterman DP, Zhou F, Li K, Lee CS, Tsabar M, Eapen VV, Mazzella A, Haber JE. Live cell monitoring of double strand breaks in S. cerevisiae. Plos Genet. 2019;15(3):e1008001.
Opathalage A, Norton MM, Juniper MPN, Langeslay B, Aghvami SA, Fraden S, Dogic Z. Self-organized dynamics and the transition to turbulence of confined active nematics. Proc Natl Acad Sci U S A. 2019.
Horvath V, Kutner DJ, Zeng MD, Epstein IR. Phase-frequency model of strongly pulse-coupled Belousov-Zhabotinsky oscillators. Chaos. 2019;29(2):023128.
Konow C, Somberg NH, Chavez J, Epstein IR, Dolnik M. Turing patterns on radially growing domains: experiments and simulations. Phys Chem Chem Phys. 2019.
Pita-Thomas W, Mahar M, Joshi A, Gan D, Cavalli V. HDAC5 promotes optic nerve regeneration by activating the mTOR pathway. Exp Neurol. 2019.
Long MJC, Lawson AP, Baggio R, Qian Y, Rozhansky L, Fasci D, El Oualid F, Weerapana E, Hedstrom L. Diarylcarbonates are a new class of deubiquitinating enzyme inhibitor. Bioorg Med Chem Lett. 2019;29(2):204-11.
Gerkman M, Yuan S, Duan P, Taufan J, Schmidt-Rohr K, Han GGD. Phase Transition of Spiropyrans: Impact of Isomerization Dynamics at High Temperatures. Chem Commun. 2019.
Royer L, Shangraw K, Herzog JJ, Pouvreau S, Marr MT, Paradis S. The metastasis suppressor protein Nme1 is a concentration dependent modulator of the Ca2+/calmodulin-dependent protein kinase II. Biochemistry. 2019.
Wang J, Cooper DL, Zhan W, Wu D, He H, Sun S, Lovett ST, Xu B. Diglycine Enables Rapid Intrabacterial Hydrolysis for Activating Anbiotics against Gram-negative Bacteria. Angew Chem Int Ed Engl. 2019.
Gutchess A, Alves AN, Paige LE, Rohleder N, Wolf JM. Age differences in the relationship between cortisol and emotional memory. Psychol Aging. 2019.
Zorba A, Nguyen V, Koide A, Hoemberger M, Zheng Y, Kutter S, Kim C, Koide S, Kern D. Allosteric modulation of a human protein kinase with monobodies. Proceedings of the National Academy of Sciences. 2019.
Wang S, Zhao Z, Rodal AA. Higher-order assembly of Sorting Nexin 16 controls tubulation and distribution of neuronal endosomes. J Cell Biol. 2019.
Halpin JC, Jangi R, Street TO. Multi-mapping confounds ribosome profiling analysis: A case-study of the Hsp90 molecular chaperone. Proteins. 2019.
DiTirro D (*), Philbrook A (*), Rubino K, Sengupta P. The C. elegans Tubby homolog dynamically modulates olfactory cilia membrane morphogenesis and phospholipid composition. eLife. 2019;8.
Jackson JD, Luu C, Vigderman A, Leshikar ED, St Jacques PL, Gutchess A. Reduction of the Self-Reference Effect in Younger and Older Adults. Psychol Neurosci. 2019;12(2):257-70.
Memisoglu G, Lanz MC, Eapen VV, Jordan JM, Lee K, Smolka MB, Haber JE. Mec1(ATR) Autophosphorylation and Ddc2(ATRIP) Phosphorylation Regulates DNA Damage Checkpoint Signaling. Cell reports. 2019;28(4):1090-102 e3.
Torrado Pacheco A (*), Tilden EI (*), Grutzner SM (*), Lane BJ, Wu Y, Hengen KB, Gjorgjieva J, Turrigiano GG. Rapid and active stabilization of visual cortical firing rates across light-dark transitions. Proc Natl Acad Sci U S A. 2019.
DiGirolamo MA, Simon JC, Hubley KM, Kopulsky A, Gutsell JN. Clarifying the relationship between trait empathy and action-based resonance indexed by EEG mu-rhythm suppression. Neuropsychologia. 2019:107172.
Morehouse BR (*), Kumar RP (*), Matos JO, Yu Q, Bannister A, Malik K, Temme JS, Krauss IJ, Oprian DD. Direct evidence for an enzyme generated LPP intermediate in (+)-limonene synthase using a fluorinated GPP substrate analog. ACS Chem Biol. 2019.
Raman G, Avendano EE, Chen S, Wang J, Matson J, Gayer B, Novotny JA, Cassidy A. Dietary intakes of flavan-3-ols and cardiometabolic health: systematic review and meta-analysis of randomized trials and prospective cohort studies. The American Journal of Clinical Nutrition. 2019.
Norton MM (*), Tompkins N (*), Blanc B, Cambria MC, Held J, Fraden S. Dynamics of Reaction-Diffusion Oscillators in Star and other Networks with Cyclic Symmetries Exhibiting Multiple Clusters. Physical Review Letters. 2019;123(14).
Schlichting M, Diaz MM, Xin J, Rosbash M. Neuron-specific knockouts indicate the importance of network communication to Drosophila rhythmicity. eLife. 2019;8.
Villalonga MB, Sussman RF, Sekuler R. Feeling the Beat (and Seeing It, Too): Vibrotactile, Visual, and Bimodal Rate Discrimination. Multisens Res. 2019:1-29.
Donelson NC, Dixit R, Pichardo-Casas I, Chiu EY, Ohman RT, Slawson JB, Klein M, Fulga TA, Van Vactor D, Griffith LC. MicroRNAs Regulate Multiple Aspects of Locomotor Behavior in Drosophila. G3 (Bethesda). 2019.
Feng Z, Wang H, Yi M, Lo CY, Sallee A, Hsieh JT, Xu B. Instructed‐assembly of small peptides inhibits drug‐resistant prostate cancer cells. Peptide Science. 2019;n/a(n/a):e24123.
Marcus R, Zhang C, Yu S, Kao G, Papaemmanouil O. NashDB. Proceedings of the VLDB Endowment. 2019;12(12):1830-3.
Heyman JB, Chen C-H, Foxman BM. On the Crystal Structures of Missing Links in the Early History of Solid-State Reactions: The Group IA Acrylates and Methacrylates. Cryst Growth Des. 2019.
Gerkman MA, Lee JK, Li X, Zhang Q, Windley M, Fonseca MV, Lu Y, Warner JH, Han GGD. Direct Imaging of Individual Molecular Binding to Clean Nanopore Edges in 2D Monolayer MoS2. ACS nano. 2019.
Zhang B, Shankara SB, Ye S, Zhang H. Design and analysis of high-risk medical device clinical trials for diabetes monitoring and treatment. Journal of Pancreatology. 2019;2(4):123-30.
Zhang B, Ye S, Shankara SB, Zhang H, Zheng Q. Neutral diagnosis: An innovative concept for medical device clinical trials. Contemp Clin Trials Commun. 2019;16:100436.
Duan P, Zhi B, Coburn L, Haynes CL, Schmidt-Rohr K. A molecular fluorophore in citric-acid/ethylenediamine carbon dots identified and quantified by multinuclear solid-state NMR. Magn Reson Chem. 2019.

2018

Litschel T, Norton MM, Tserunyan V, Fraden S. Engineering reaction-diffusion networks with properties of neural tissue. Lab Chip. 2018;18(5):714-22.
Saraidaridis JT, Molina G, Savit LR, Milch H, Mei T, Chin S, Kuo J, Bordeianou L. Pudendal nerve terminal motor latency testing does not provide useful information in guiding therapy for fecal incontinence. Int J Colorectal Dis. 2018.
Roberts DH, Saripalli L, Wang KX, Rao MS, Subrahmanyan R, KleinStern CC, Morii-Sciolla CY, Simpson L. What are “X-shaped” Radio Sources Telling Us? I. Very Large Array Imaging of a Large Sample of Candidate XRGs. Astrophys J. 2018;852(1).
Lorson LC, Tai O, Foxman BM. Use of Topotactic Phase Transformations to Obtain Solutions of the Crystal Structures of Highly Disordered Materials. Cryst Growth Des. 2018;18(1):409-15.
Zhou J, Du X, Chen X, Wang J, Zhou N, Wu D, Xu B. Enzymatic Self-Assembly Confers Exceptionally Strong Synergism with NF-kB Targeting for Selective Necroptosis of Cancer Cells. J Am Chem Soc. 2018.
Turman DL, Cheloff AZ, Corrado AD, Nathanson JT, Miller C. Molecular Interactions between a Fluoride Ion Channel and Synthetic Protein Blockers. Biochemistry. 2018.
Pochapsky TC, Wong N, Zhuang Y, Futcher J, Pandelia M-E, Teitz DR, Colthart AM. NADH reduction of nitroaromatics as a probe for residual ferric form high-spin in a cytochrome P450. Biochim Biophys Acta. 2018;1866(1):126-33.
Zhou J, Du X, Berciu C, Del Signore SJ, Chen X, Yamagata N, Rodal AA, Nicastro D, Xu B. Cellular Uptake of A Taurine-Modified, Ester Bond-Decorated D-Peptide Derivative via Dynamin-Based Endocytosis and Macropinocytosis. Mol Ther. 2018.
Lisman J, Cooper K, Sehgal M, Silva AJ. Memory formation depends on both synapse-specific modifications of synaptic strength and cell-specific increases in excitability. Nat Neurosci. 2018.
Reiner BR, Mucha NT, Rothstein A, Temme JS, Duan P, Schmidt-Rohr K, Foxman BM, Wade CR. Zirconium Metal-Organic Frameworks Assembled from Pd and Pt P(N)N(N)P Pincer Complexes: Synthesis, Postsynthetic Modification, and Lewis Acid Catalysis. Inorg Chem. 2018.
Wang H, Feng Z, Qin Y, Wang J, Xu B. Nucleopeptide Assemblies Selectively Sequester ATP in Cells. Angew Chem Int Ed Engl. 2018.
Norton MM, Baskaran A, Opathalage A, Langeslay B, Fraden S, Baskaran A, Hagan MF. Insensitivity of active nematic liquid crystal dynamics to topological constraints. Phys Rev E. 2018;97(1-1):012702.
Gaskins DK, Soohoo JS, Dolnik M, Epstein IR. Birth and Death of Invading Standing Waves in the BZ-AOT Reaction-diffusion System. Isr J Chem. 2018.
Leow S-S, Luu A, Shrestha S, Hayes KC, Sambanthamurthi R. Drosophila larvae fed palm fruit juice (PFJ) delay pupation via expression regulation of hormetic stress response genes linked to ageing and longevity. Experimental Gerontology. 2018.
Tu Y, Kreinbring CA, Hill M, Liu C, Petsko GA, McCune CD, Berkowitz DB, Liu D, Ringe D. Crystal Structures of Cystathionine beta-Synthase from Saccharomyces cerevisiae: One Enzymatic Step at a Time. Biochemistry. 2018.
Acker DWM, Wong I, Kang M, Paradis S. Semaphorin 4D promotes inhibitory synapse formation and suppresses seizures in vivo. Epilepsia. 2018.
Moore AR, Richards SE, Kenny K, Royer L, Chan U, Flavahan K, Van Hooser SD, Paradis S. Rem2 stabilizes intrinsic excitability and spontaneous firing in visual circuits. eLife. 2018;7.
Memet E, Hilitsk F, Morris MA, Schwenger WJ, Dogic Z, Mahadevan L. Microtubules soften due to cross-sectional flattening. eLife. 2018;7.
Cai H, Liu M, Russell CJ. Directed evolution of an influenza reporter virus to restore replication and virulence and enhance non-invasive bioluminescence imaging in mice. Journal of virology. 2018.
Goodwin PR, Meng A, Moore J, Hobin M, Fulga TA, Van Vactor D, Griffith LC. MicroRNAs Regulate Sleep and Sleep Homeostasis in Drosophila. Cell reports. 2018;23(13):3776-86.
McDermott JE, Goldblatt D, Paradis S. Class 4 Semaphorins and Plexin-B receptors regulate GABAergic and glutamatergic synapse development in the mammalian hippocampus. Molecular and Cellular Neuroscience. 2018.
Garabedian MV, Stanishneva-Konovalova T, Lou C, Rands TJ, Pollard LW, Sokolova OS, Goode BL. Integrated control of formin-mediated actin assembly by a stationary inhibitor and a mobile activator. J Cell Biol. 2018.
Royer L, Herzog JJ, Kenny K, Tzvetkova B, Cochrane JC, Marr MT, 2nd, Paradis S. The Ras-like GTPase Rem2 is a potent inhibitor of calcium/calmodulin-dependent kinase II activity. J Biol Chem. 2018.
Cao Z, Wu S, Wang C, Wang L, Soares JC, He SC, Zhang XY. Serotonin transporter gene (5-HTT) rs6354 polymorphism, job-related stress, and their interaction in burnout in healthcare workers in a Chinese hospital. Psychopharmacology. 2018.
Wong NR, Liu X, Lloyd H, Colthart AM, Ferrazzoli AE, Cooper DL, Zhuang Y, Esquea P, Futcher J, Pochapsky TM, Matthews JM, Pochapsky TC. A new approach to understanding structure-function relationships in cytochromes P450 by targeting terpene metabolism in the wild. J Inorg Biochem. 2018;188:96-101.
Maharjan DM, Dai YY, Glantz EH, Jadhav SP. Disruption of dorsal hippocampal – prefrontal interactions using chemogenetic inactivation impairs spatial learning. Neurobiol Learn Mem. 2018.
Li J, Zhan ZQ, Du XW, Wang JQ, Hong BD, Xu B. Selection of Secondary Structures of Heterotypic Supramolecular Peptide Assemblies by an Enzymatic Reaction. Angew Chem Int Edit. 2018;57(36):11716-21.
Flores VL, Parmet T, Mukherjee N, Nelson S, Katz DB, Levitan D. The role of the gustatory cortex in incidental experience-evoked enhancement of later taste learning. Learn Mem. 2018;25(11):587-600.
Gaskins DK, Soohoo JS, Epstein IR, Dolnik M. Turing-Hopf front invasion: Rings and shells. Phys Rev E. 2018;98(4).
Johnston AB, Hilton DM, McConnell P, Johnson B, Harris MT, Simone A, Amarasinghe GK, Cooper JA, Goode BL. A novel mode of Capping Protein-regulation by Twinfilin. eLife. 2018;7.
Wirth JD, Boucher JI, Jacobowitz JR, Classen S, Theobald DL. Functional and structural resilience of the active site loop in the evolution of Plasmodium lactate dehydrogenase. Biochemistry. 2018.
Aizenman AM, Gold JM, Sekuler R. Multisensory Integration in Short-term Memory: Musicians do Rock. Neuroscience. 2018;389:141-51.
Gorur-Shandilya S, Hoyland A, Marder E. Xolotl: An Intuitive and Approachable Neuron and Network Simulator for Research and Teaching. Front Neuroinform. 2018.
Laranjo LT (*), Klaric JA (*), Pearlman LR, Lovett ST. Stimulation of Replication Template-Switching by DNA-Protein Crosslinks. Genes (Basel). 2018;10(1).
Roy A, Christie IK, Escobar GM, Osik JJ, Popovic M, Ritter NJ, Stacy AK, Wang S, Fiser J, Miller P, Van Hooser SD. Does experience provide a permissive or instructive influence on the development of direction selectivity in visual cortex? Neural Dev. 2018;13(1):16.
Stamoulis C, Connolly J, Axeen E, Kaulas H, Bolton J, Dorfman K, Halford JJ, Duffy FH, Treves ST, Pearl PL. Non-invasive Seizure Localization with Ictal Single-Photon Emission Computed Tomography is Impacted by Preictal/Early Ictal Network Dynamics. IEEE Trans Biomed Eng. 2018.

2017

Ritter NJ, Anderson NM, Van Hooser SD. Visual stimulus speed does not influence the rapid emergence of direction selectivity in ferret visual cortex. J Neurosci. 2017.
Zhou J, Du X, Wang J, Yamagata N, Xu B. Enzyme-instructed self-assembly of peptides containing phosphoserine to form supramolecular hydrogels as potential soft biomaterials. Frontiers of Chemical Science and Engineering. 2017.
Zhou N, Cao X, Du X, Wang H, Wang M, Liu S, Nguyen K, Schmidt-Rohr K, Xu Q, Liang G, Xu B. Hyper-Crosslinkers Lead to Temperature- and pH-Responsive Polymeric Nanogels with Unusual Volume Change. Angew Chem Int Ed Engl. 2017.
Eapen VV, Waterman DP, Bernard A, Schiffmann N, Sayas E, Kamber R, Lemos B, Memisoglu G, Ang J, Mazella A, Chuartzman SG, Loewith RJ, Schuldiner M, Denic V, Klionsky DJ, Haber JE. A pathway of targeted autophagy is induced by DNA damage in budding yeast. Proc Natl Acad Sci U S A. 2017.
Otopalik AG, Goeritz ML, Sutton AC, Brookings T, Guerini CJ, Marder E. Sloppy morphological tuning in identified neurons of the crustacean stomatogastric ganglion. eLife. 2017;6.
Abruzzi KC, Zadina A, Luo W, Wiyanto E, Rahman R, Guo F, Shafer O, Rosbash M. RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides. Plos Genet. 2017;13(2):e1006613.
Keller AS, Payne L, Sekuler R. Characterizing the roles of alpha and theta oscillations in multisensory attention. Neuropsychologia. 2017.
Morehouse BR, Kumar RP, Matos JO, Olsen SN, Entova S, Oprian DD. Functional and Structural Characterization of a (+)-Limonene Synthase from Citrus sinensis. Biochemistry. 2017.
Kumar RP, Morehouse BR, Matos JO, Malik K, Lin H, Krauss IJ, Oprian DD. Structural Characterization of Early Michaelis Complexes in the Reaction Catalyzed by (+)-Limonene Synthase from Citrus sinensis Using Fluorinated Substrate Analogues. Biochemistry. 2017.
Wu R, Sanishvili R, Belitsky BR, Juncosa JI, Le HV, Lehrer HJS, Farley M, Silverman RB, Petsko GA, Ringe D, Liu D. PLP and GABA trigger GabR-mediated transcription regulation in Bacillus subtilis via external aldimine formation. Proc Natl Acad Sci U S A. 2017.
Nahmani M, Lanahan C, DeRosier D, Turrigiano GG. High-numerical-aperture cryogenic light microscopy for increased precision of superresolution reconstructions. Proc Natl Acad Sci U S A. 2017.
Da Veiga Beltrame E, Tyrwhitt-Drake J, Roy I, Shalaby R, Suckale J, Pomeranz Krummel D. 3D Printing of Biomolecular Models for Research and Pedagogy. J Vis Exp. 2017(121).
Naffin-Olivos JL, Daab A, White A, Goldfarb NE, Milne AC, Liu D, Baikovitz J, Dunn BM, Rengarajan J, Petsko GA, Ringe D. Structure Determination of Mycobacterium tuberculosis Serine Protease Hip1 (Rv2224c). Biochemistry. 2017.
Mehta A, Beach A, Haber JE. Homology Requirements and Competition between Gene Conversion and Break-Induced Replication during Double-Strand Break Repair. Mol Cell. 2017;65(3):515-26 e3.
Toombs JA, Sytnikova YA, Chirn GW, Ang I, Lau NC, Blower MD. Xenopus Piwi proteins interact with a broad proportion of the oocyte transcriptome. RNA. 2017;23(4):504-20.
Pochapsky TC, Wong N, Zhuang Y, Futcher J, Pandelia M-E, Teitz DR, Colthart AM. NADH reduction of nitroaromatics as a probe for residual ferric form high-spin in a cytochrome P450. Biochimica et Biophysica Acta (BBA) – Proteins and Proteomics. 2017.
Sugimura R, Jha DK, Han A, Soria-Valles C, da Rocha EL, Lu YF, Goettel JA, Serrao E, Rowe RG, Malleshaiah M, Wong I, Sousa P, Zhu TN, Ditadi A, Keller G, Engelman AN, Snapper SB, Doulatov S, Daley GQ. Haematopoietic stem and progenitor cells from human pluripotent stem cells. Nature. 2017.
Christie IK, Miller P, Van Hooser SD. Cortical amplification models of the experience-dependent development of selective columns and response sparsification. J Neurophysiol. 2017:jn 00177 2017.
Knecht ZA, Silbering AF, Cruz J, Yang L, Croset V, Benton R, Garrity PA. Ionotropic Receptor-dependent moist and dry cells control hygrosensation in Drosophila. eLife. 2017;6.
Li J, Fricks C, Caspar DLD, Rayment I. Reversible swelling of sbmv is associated with reversible disordering. J Struct Biol. 2017.
McCarthy P, Garside E, Meschede-Krasa Y, MacMillan A, Pomeranz Krummel D. Reversibly constraining spliceosome-substrate complexes by engineering disulfide crosslinks. Methods. 2017.
Yamagata N, Chen X, Zhou J, Li J, Du X, Xu B. Enzymatic self-assembly of an immunoreceptor tyrosine-based inhibitory motif (ITIM). Organic & biomolecular chemistry. 2017.
Wang RW, Lee CS, Haber JE. Position effects influencing intrachromosomal repair of a double-strand break in budding yeast. PLoS One. 2017;12(7):e0180994.
Gorla SK, Zhang Y, Rabideau MM, Qin A, Chacko S, House AL, Johnson CR, Mandapati K, Bernstein HM, McKenney ES, Boshoff H, Zhang M, Glomski IJ, Goldberg JB, Cuny GD, Mann BJ, Hedstrom L. Benzoxazoles, phthalazinones, and arylurea-based compounds with IMPDH-independent antibacterial activity against Francisella tularensis. Antimicrobial agents and chemotherapy. 2017.
Sakhardande R, Stanojeviea S, Baskaran A, Baskaran A, Hagan MF, Chakraborty B. Theory of microphase separation in bidisperse chiral membranes. Phys Rev E. 2017;96(1).
Tsai R, Correa IR, Xu MY, Xu SY. Restriction and modification of deoxyarchaeosine (dG+)-containing phage 9 g DNA. Scientific reports. 2017;7(1):8348.
Clark JP, Rahman R, Yang N, Yang LH, Lau NC. Drosophila PAF1 Modulates PIWI/piRNA Silencing Capacity. Curr Biol. 2017.
Mascarenhas R, Le HV, Clevenger KD, Lehrer HJ, Ringe D, Kelleher NL, Silverman RB, Liu D. Selective Targeting by a Mechanism-Based Inactivator against Pyridoxal 5′-Phosphate-Dependent Enzymes: Mechanisms of Inactivation and Alternative Turnover. Biochemistry. 2017.
Zhang H, Wu B, Marquard SL, Litle ED, Dickie DA, Bezpalko MW, Foxman BM, Thomas CM. Investigation of Ketone C═O Bond Activation Processes by Heterobimetallic Zr/Co and Ti/Co Tris(phosphinoamide) Complexes. Organometallics. 2017.
Zhou N, Cao Z, Xu B. Functional Hyper Crosslinkers. Chemistry. 2017.
Last NB, Sun S, Pham MC, Miller C. Molecular determinants of permeation in a fluoride-specific ion channel. eLife. 2017;6.
Rossetti T, Banerjee S, Kim C, Leubner M, Lamar C, Gupta P, Lee B, Neve R, Lisman J. Memory Erasure Experiments Indicate a Critical Role of CaMKII in Memory Storage. Neuron. 2017;96(1):207-16 e2.
Gutchess A, Garner L, Ligouri L, Konuk AI, Boduroglu A. Culture impacts the magnitude of the emotion-induced memory trade-off effect. Cogn Emot. 2017:1-8.
Del Signore SJ (*), Biber SA (*), Lehmann KS, Heimler SR, Rosenfeld BH, Eskin TL, Sweeney ST, Rodal AA. dOCRL maintains immune cell quiescence by regulating endosomal traffic. Plos Genet. 2017;13(10):e1007052.
Kumar RP, Morehouse BR, Fofana J, Trieu MM, Zhou DH, Lorenz MO, Oprian DD. Structure and monomer/dimer equilibrium for the guanylyl cyclase domain of the optogenetics protein RhoGC. J Biol Chem. 2017.
Herzog JJ, Deshpande M, Shapiro L, Rodal AA, Paradis S. TDP-43 misexpression causes defects in dendritic growth. Scientific reports. 2017;7(1):15656.
Kuras Y, Assaf N, Thoma MV, Gianferante D, Hanlin L, Chen X, Fiksdal A, Rohleder N. Blunted Diurnal Cortisol Activity in Healthy Adults with Childhood Adversity. Frontiers in human neuroscience. 2017.
Lorson LC, Tai O, Foxman BM. Use of Topotactic Phase Transformations to Obtain Solutions of the Crystal Structures of Highly Disordered Materials. Cryst Growth Des. 2017.
Pepperberg IM, Gray SL, Lesser JS, Hartsfield LA. Piagetian liquid conservation in grey parrots (Psittacus erithacus). J Comp Psychol. 2017;131(4):370-83.
Paige LE, Amado S, Gutchess AH. Influence of encoding instructions and response bias on cross-cultural differences in specific recognition. Cult Brain. 2017;5(2):153-68

2016

Puvenna V, Engeler M, Banjara M, Brennan C, Schreiber P, Dadas A, Bahrami A, Solanki J, Bandyopadhyay A, Morris JK, Bernick C, Ghosh C, Bazarian JJ, Janigro D. Is phosphorylated tau unique to chronic traumatic encephalopathy? Phosphorylated tau in epileptic brain and chronic traumatic encephalopathy. Brain Res. 2016;1630:225-40 .
Baez-Santiago MA, Reid EE, Moran A, Maier JX, Marrero-Garcia Y, Katz DB. Dynamic taste responses of parabrachial pontine neurons in awake rats. J Neurophysiol. 2016:jn 00311 2015.
Lee CS, Wang RW, Chang HH, Capurso D, Segal MR, Haber JE. Chromosome position determines the success of double-strand break repair. Proc Natl Acad Sci U S A. 2016;113(2):E146-54.
Steindel PA, Chen EH, Wirth JD, Theobald DL. Gradual neofunctionalization in the convergent evolution of trichomonad lactate and malate dehydrogenases. Protein Sci. 2016;25(7):1319-31 .
Fritz-Laylin LK, Levy YY, Levitan E, Chen S, Cande WZ, Lai EY, Fulton C. Rapid centriole assembly in naegleria reveals conserved roles for both de novo and mentored assembly. Cytoskeleton (Hoboken). 2016;73(3):109-16 .
Arora GK, Tran SL, Rizzo N, Jain A, Welte MA. Temporal control of bidirectional lipid-droplet motion depends on the ratio of kinesin-1 and its cofactor Halo. Journal of Cell Science. 2016;129(7):1416-28.
Colthart AM, Tietz DR, Ni Y, Friedman JL, Dang M, Pochapsky TC. Detection of substrate-dependent conformational changes in the P450 fold by nuclear magnetic resonance. Scientific reports. 2016;6:22035.
Wang AL, Gold JM, Tompkins N, Heymann M, Harrington KI, Fraden S. Configurable NOR gate arrays from Belousov-Zhabotinsky micro-droplets. The European Physical Journal Special Topics. 2016;225(1):211-27.
Parisky KM, Agosto Rivera JL, Donelson NC, Kotecha S, Griffith LC. Reorganization of Sleep by Temperature in Drosophila Requires Light, the Homeostat, and the Circadian Clock. Current Biology. 2016;26(7):882-92.
Zhou J, Du X, Yamagata N, Xu B. Enzyme-Instructed Self-Assembly of Small d-Peptides as a Multiple-Step Process for Selectively Killing Cancer Cells. J Am Chem Soc. 2016.
Neal SJ, Park J, DiTirro D, Yoon J, Shibuya M, Choi W, Schroeder FC, Butcher RA, Kim K, Sengupta P. A Forward Genetic Screen for Molecules Involved in Pheromone-Induced Dauer Formation in Caenorhabditis elegans. G3 (Bethesda). 2016;6(5):1475-87 .
Hengen KB, Torrado Pacheco A, McGregor JN, Van Hooser SD, Turrigiano GG. Neuronal Firing Rate Homeostasis is Inhibited by Sleep and Promoted by Wake. Cell. 2016;165(1):180-91.. [science blog]
Chin SM, Jansen S, Goode BL. TIRF microscopy analysis of human Cof1, Cof2, and ADF effects on actin filament severing and turnover. J Mol Biol. 2016;428(8):1604-16.
Deshpande AR, Wagenpfeil K, Pochapsky TC, Petsko GA, Ringe D. Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry. 2016;55(9):1398-407.
Flores VL, Moran A, Bernstein M, Katz DB. Preexposure to salty and sour taste enhances conditioned taste aversion to novel sucrose. Learn Mem. 2016;23(5):221-8.
Zhou R, Kuang Y, Zhou J, Du X, Li J, Shi J, Haburcak R, Xu B. Nanonets Collect Cancer Secretome from Pericellular Space. PLoS One. 2016;11(4):e0154126.
Tsabar M, Haase J, Harrison B, Snider CE, Eldridge B, Kaminsky L, Hine RM, Haber JE, Bloom K. A Cohesin-Based Partitioning Mechanism Revealed upon Transcriptional Inactivation of Centromere. Plos Genet. 2016;12(4):e1006021.
Greenwald E, Yuki K. A translational consideration of intercellular adhesion molecule-1 biology in the perioperative setting. Transl Perioper Pain Med. 2016;1(2):17-23.
Ekesan S, Lin DY, Herzfeld J. Magnetism and Bond Order in Diatomic Molecules Described by Semi-Classical Electrons. J Phys Chem B. 2016;120(26):6264-9.
Tsabar M, Waterman DP, Aguilar F, Katsnelson L, Eapen VV, Memisoglu G, Haber JE. Asf1 facilitates dephosphorylation of Rad53 after DNA double-strand break repair. Genes Dev. 2016;30(10):1211-24.
Amichetti NM, White AG, Wingfield A. Multiple solutions to the same problem: utilization of plausibility and syntax in sentence comprehension by older adults with impaired hearing. Frontiers in Psychology. 2016; 7:7892016.
Gaskins DK, Pruc EE, Epstein IR, Dolnik M. Multifold Increases in Turing Pattern Wavelength in the Chlorine Dioxide-Iodine-Malonic Acid Reaction-Diffusion System. Physical Review Letters. 2016;117(5).
Sands M, Garbacz A, Isaacowitz DM. Just Change the Channel? Studying Effects of Age on Emotion Regulation Using a TV Watching Paradigm. Social Psychological and Personality Science. 2016;7(8):788-95 .
Guo F, Yu J, Jung HJ, Abruzzi KC, Luo W, Griffith LC, Rosbash M. Circadian neuron feedback controls the Drosophila sleep-activity profile. Nature. 2016;536(7616):292-7.
Wang W, Nguyen LT, Burlak C, Chegini F, Guo F, Chataway T, Ju S, Fisher OS, Miller DW, Datta D, Wu F, Wu CX, Landeru A, Wells JA, Cookson MR, Boxer MB, Thomas CJ, Gai WP, Ringe D, Petsko GA, Hoang QQ. Caspase-1 causes truncation and aggregation of the Parkinson’s disease-associated protein α-synuclein. Proc Natl Acad Sci U S A. 2016;113(34):9587-92 .
Deshpande M, Feiger Z, Shilton AK, Luo CC, Silverman E, Rodal AA. Role of BMP receptor traffic in synaptic growth defects in an ALS model. Mol Biol Cell. 2016;27(19):2898-910 .
Wang H, Feng Z, Wu D, Fritzsching KJ, Rigney M, Zhou J, Jiang Y, Schmidt-Rohr K, Xu B. Enzyme-Regulated Supramolecular Assemblies of Cholesterol Conjugates against Drug-Resistant Ovarian Cancer Cells. J Am Chem Soc. 2016;138(34):10758-61 .
Steinmetz CC, Tatavarty V, Sugino K, Shima Y, Joseph A, Lin H, Rutlin M, Lambo M, Hempel CM, Okaty BW, Paradis S, Nelson SB, Turrigiano G. Upregulation of μ3A Drives Homeostatic Plasticity by Rerouting AMPAR into the Recycling Endosomal Pathway. Cell reports. 2016;16(10):2711-22.
Stanishneva-Konovalova TB, Kelley CF, Eskin TL, Messelaar EM, Wasserman SA, Sokolova OS, Rodal AA. Coordinated autoinhibition of F-BAR domain membrane binding and WASp activation by Nervous Wreck. Proc Natl Acad Sci U S A. 2016;113(38):E5552-61.
Levitan D, Fortis-Santiago Y, Figueroa JA, Reid EE, Yoshida T, Barry NC, Russo A, Katz DB. Memory Retrieval Has a Dynamic Influence on the Maintenance Mechanisms That Are Sensitive to zeta-Inhibitory Peptide (ZIP). J Neurosci. 2016;36(41):10654-62.
Sirianni NM, Yuan H, Rice JE, Kaufman RS, Deng J, Fulton C, Wangh LJ. Closed-Tube Barcoding. Genome. 2016:1-13.
Haburcak R, Shi J, Du X, Yuan D, Xu B. Ligand-Receptor Interaction Modulates the Energy Landscape of Enzyme-Instructed Self-Assembly of Small Molecules. J Am Chem Soc. 2016;138(47):15397-404.
Alioto SL, Garabedian MV, Bellavance DR, Goode BL. Tropomyosin and Profilin Cooperate to Promote Formin-Mediated Actin Nucleation and Drive Yeast Actin Cable Assembly. Curr Biol 2016;26(23):3230-7 .
O’Toole SM, Ferrer MM, Mekonnen J, Zhang H, Shima Y, Ladle DR, Nelson SB. Dicer maintains the identity and function of proprioceptive sensory neurons. J Neurophysiol. 2016:jn 00763 2016.
Li J, Du X, Hashim S, Shy A, Xu B. Aromatic-Aromatic Interactions Enable alpha-Helix to beta-Sheet Transition of Peptides to Form Supramolecular Hydrogels. J Am Chem Soc. 2016;139(1):71-4 .
Saper NI, Bezpalko MW, Foxman BM, Thomas CM. Synthesis of Chiral Heterobimetallic Tris(Phosphinoamide) Zr/Co Complexes. Polyhedron 2016;114:88-95 .
Stapleford CJ, Väänänen DJ, Kneller JP, McLaughlin GC, Shapiro BT. Nonstandard neutrino interactions in supernovae. Phys Rev D. 2016;94(9).
Shamay Y, Elkabets M, Li H, Shah J, Brook S, Wang F, Adler K, Baut E, Scaltriti M, Jena PV, Gardner EE, Poirier JT, Rudin CM, Baselga J, Haimovitz-Friedman A, Heller DA. P-selectin is a nanotherapeutic delivery target in the tumor microenvironment. Sci Transl Med. 2016;8(345):345ra87.

2015

Shi J, Du X, Huang Y, Zhou J, Yuan D, Wu D, Zhang Y, Haburcak R, Epstein IR, Xu B. Ligand-receptor interaction catalyzes the aggregation of small molecules to induce cell necroptosis. J Am Chem Soc. 2015;137(1):26-9.
Hass MA, Liu W, Agafonov RV, Otten R, Phung LA, Schilder JT, Kern D, Ubbink M. A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy. J Biomol NMR. 2015;61(2):123-36.
Kerns SJ, Agafonov RV, Cho YJ, Pontiggia F, Otten R, Pachov DV, Kutter S, Phung LA, Murphy PN, Thai V, Alber T, Hagan MF, Kern D. The energy landscape of adenylate kinase during catalysis. Nat Struct Mol Biol. 2015;22(2):124-31.
Horvath V, Kutner DJ, Chavis III JT, Epstein IR. Pulse-coupled BZ oscillators with unequal coupling strengths. Phys Chem Chem Phys. 2015;17(6):4664-76.
Lee KH, Napoline JW, Bezpalko MW, Foxman BM, Thomas CM. Probing Substituent Effects in Phosphinoamine Ligands Using Mo(CO)5L Complexes. Polyhedron. 2015;87:354-60.
Abruzzi K, Chen X, Nagoshi E, Zadina A, Rosbash M. RNA-seq Profiling of Small Numbers of Drosophila Neurons. Method Enzymol. 2015;551:369-86.
Mathioudakis N, Sundaresh R, Larsen A, Ruff W, Schiller J, Guerrero-Cazares H, Burger P, Salvatori R, Quinones-Hinojosa A. Expression of the pituitary stem/progenitor marker GFRalpha2 in human pituitary adenomas and normal pituitary. Pituitary. 2015;18(1):31-41.
Shi J, Du X, Yuan D, Haburcak R, Wu D, Zhou N, Xu B. Enzyme transformation to modulate the ligand-receptor interactions between small molecules. Chem Commun (Camb). 2015;51(23):4899-901.
McInnis CM, Wang D, Gianferante D, Hanlin L, Chen X, Thoma MV, Rohleder N. Response and habituation of pro and anti inflammatory gene expression to repeated acute stress. Brain Behav Immun. 2015;46:237-48.
Zaltsman JB, Heimel JA, Van Hooser SD. Weak orientation and direction selectivity in lateral geniculate nucleus representing central vision in the gray squirrel Sciurus carolinensis. J Neurophysiol. 2015;113(7):2987-97
Beadle JN, Sheehan AH, Dahlben B, Gutchess AH. Aging, empathy, and prosociality. J Gerontol B Psychol Sci Soc Sci. 2015;70(2):215-24
Turman DL, Nathanson JT, Stockbridge RB, Street TO, Miller C. Two-sided block of a dual-topology F- channel. Proc Natl Acad Sci U S A. 2015;112(18):5697-701.
Cooper DL, Boyle DC, Lovett ST. Genetic Analysis of Escherichia coli RadA: Functional Motifs and Genetic Interactions. Mol Microbiol. 2015;95(5):769-79.
Jansen S, Collins A, Chin SM, Ydenberg CA, Gelles J, Goode BL. Single-molecule imaging of a three-component ordered actin disassembly mechanism. Nat Commun. 2015;6:7202.
Van Gorkom KJ, Wardle JFC, Rauch AP, Gobeille DB. Comparing different indicators of quasar orientation. Mon Not R Astron Soc. 2015;450(4):4240-7.
Posner SR, Lorson LC, Gell AR, Foxman BM. Experimental Establishment of Mother-Daughter Orientation Relationships and Twinning Effects in Phase Transitions : A Great Legacy from Jack Gougoutas and Peggy Etter. Cryst Growth Des. 2015:150603105504006.
Tompkins N, Cambria MC, Wang AL, Heymann M, Fraden S. Creation and perturbation of planar networks of chemical oscillators. Chaos: An Interdisciplinary Journal of Nonlinear Science. 2015;25(6):064611.
Schulz R, Terry SF. The Science, Applications, and Ethical Concerns Surrounding Low Copy Number DNA Analysis. Genet Test Mol Biomarkers. 2015;19(6):281-2.
Gainey MA, Tatavarty V, Nahmani M, Lin H, Turrigiano GG. Activity-dependent synaptic GRIP1 accumulation drives synaptic scaling up in response to action potential blockade. Proceedings of the National Academy of Sciences. 2015:201510754.
Ydenberg CA, Johnston A, Weinstein J, Bellavance D, Jansen S, Goode BL. Combinatorial genetic analysis of a network of actin disassembly-promoting factors. Cytoskeleton (Hoboken). 2015;72(7):349-61.
Boltax AL, Armanious S, Kosinski-Collins MS, Pontrello JK. Connecting biology and organic chemistry introductory laboratory courses through a collaborative research project. Biochem Mol Biol Educ. 2015;43(4):233-44.
Jiang H, Zhao L, Dong X, He A, Zheng C, Johansson M, Karlsson A, Zheng X. Tanshinone IIA enhances bystander cell killing of cancer cells expressing Drosophila melanogaster deoxyribonucleoside kinase in nuclei and mitochondria. Oncology reports.2015;34(3):1487-93.
Gutchess AH, Sokal R, Coleman JA, Gotthilf G, Grewal L, Rosa N. Age differences in self-referencing: Evidence for common and distinct encoding strategies.. Brain Res. 2015;1612:118-27.
Zhou J, Du X, Li J, Yamagata N, Xu B. Taurine Boosts Cellular Uptake of Small d-Peptides for Enzyme-Instructed Intracellular Molecular Self-Assembly. J Am Chem Soc. 2015;137(32):10040-3.
Shi J, Du X, Yuan D, Haburcak R, Zhou N, Xu B. Supramolecular Detoxification of Neurotoxic Nanofibrils of Small Molecules via Morphological Switch. Bioconjug Chem. 2015;26(9):1879-83.
Gabuzda DC, Knuettel S, Reardon B. Transverse Faraday-rotation gradients across the jets of 15 active galactic nuclei. Mon Not R Astron Soc. 2015;450(3):2441-50.
Liu C, Haynes PR, Donelson NC, Aharon S, Griffith LC. Sleep in populations of Drosophila melanogaster. eNeuro. 2015;2(4).
Guo Z, Tzvetkova B, Bassik JM, Bodziak T, Wojnar BM, Qiao W, Obaida MA, Nelson SB, Hu BH, Yu P. RNASeqMetaDB: a database and web server for navigating metadata of publicly available mouse RNA-Seq data sets. Bioinformatics. 2015;31(24):4038-40.
Roberts DH, Cohen JP, Lu J, Saripalli L, Subrahmanyan R. The Abundance of X-Shaped Radio Sources. I. Vla Survey of 52 Sources with Off-Axis Distortions. The Astrophysical Journal Supplement Series. 2015;220(1):7. [commentary at Astronomy magazine]
Brown LT, Sutera VA, Jr., Zhou S, Weitzel CS, Cheng Y, Lovett ST. Connecting Replication and Repair: YoaA, a Helicase-Related Protein, Promotes Azidothymidine Tolerance through Association with Chi, an Accessory Clamp Loader Protein. Plos Genet. 2015;11(11):e1005651.
Rawlins CM, Salisbury JP, Feldman DR, Isim S, Agar NY, Luther E, Agar JN. Imaging and Mapping of Tissue Constituents at the Single-Cell Level Using MALDI MSI and Quantitative Laser Scanning Cytometry. Methods Mol Biol. 2015;1346:133-49.
Shi J, Yuan D, Haburcak R, Zhang Q, Zhao C, Zhang X, Xu B. Enzymatic Dissolution of Biocomposite Solids Consisting of Phosphopeptides to Form Supramolecular Hydrogels. Chemistry 2015;21(50):18047-51 .
Keller AS, Sekuler R. Memory and learning with rapid audiovisual sequences. J Vis. 2015;15(15):7.
Kumar RP, Ranaghan MJ, Ganjei AY, Oprian DD. Crystal Structure of Recoverin with Calcium Ions Bound to Both Functional EF-Hands. Biochemistry. 2015;54(49):7222-8.
Johnson MD, Fish VL, Doeleman SS, Marrone DP, Plambeck RL, Wardle JFC, Akiyama K, Asada K, Beaudoin C, Blackburn L, Blundell R, Bower GC, Brinkerink C, Broderick AE, Cappallo R, Chael AA, Crew GB, Dexter J, Dexter M, Freund R, Friberg P, Gold R, Gurwell MA, Ho PTP, Honma M, Inoue M, Kosowsky M, Krichbaum TP, Lamb J, Loeb A, Lu RS, MacMahon D, McKinney JC, Moran JM, Narayan R, Primiani RA, Psaltis D, Rogers AEE, Rosenfeld K, SooHoo J, Tilanus RPJ, Titus M, Vertatschitsch L, Weintroub J, Wright M, Young KH, Zensus JA, Ziurys LM. Resolved magnetic-field structure and variability near the event horizon of Sagittarius A. Science. 2015;350(6265):1242-5. [comment]
Kelley CF, Messelaar EM, Eskin TL, Wang S, Song K, Vishnia K, Becalska AN, Shupliakov O, Hagan MF, Danino D, Sokolova OS, Nicastro D, Rodal AA. Membrane Charge Directs the Outcome of F-BAR Domain Lipid Binding and Autoregulation. Cell reports. 2015;13(11):2597-609
DeScioli P, Karpoff R. People’s Judgments About Classic Property Law Cases. Hum Nat. 2015;26(2):184-209.
Koles K, Yeh AR, Rodal AA. Tissue-specific tagging of endogenous loci in Drosophila melanogaster. Biol Open. 2015;5(1):83-9.

2014

Preska Steinberg A, Epstein IR, Dolnik M. Target Turing Patterns and Growth Dynamics in the Chlorine Dioxide-iodine-malonic Acid Reaction. J Phys Chem A. 2014;118(13):2393-400.
Rembold M, Ciglar L, Yanez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. A conserved role for Snail as a potentiator of active transcription. Genes Dev. 2014;28(2):167-81.
Rosado M, Barber CF, Berciu C, Feldman S, Birren SJ, Nicastro D, Goode BL. Critical roles for multiple formins during cardiac myofibril development and repair. Mol Biol Cell. 2014;25(6):811-27.
Zhou W, Saper NI, Krogman JP, Foxman BM, Thomas CM. Effect of ligand modification on stoichiometric and catalytic reactivity of phosphinoamide-bridged heterobimetallic Zr/Co complexes. Dalton T. 2014;43(5):1984-9.
Xing W, Hou AY, Fischer A, Owens CL, Jiang Z. The cellient automated cell block system is useful in the differential diagnosis of atypical glandular cells in Papanicolaou tests. Cancer Cytopathol. 2014;122(1):8-14.
Raissi AJ, Scangarello FA, Hulce KR, Pontrello JK, Paradis S. Enhanced Potency of the Metalloprotease Inhibitor TAPI-2 by Multivalent Display. Bioorg Med Chem Lett. 2014;24(8):2002-7.
Saper NI, Snider BB. 2,2,6,6-Tetramethylpiperidine-Catalyzed, Ortho-selective Chlorination of Phenols by Sulfuryl Chloride. J Org Chem. 2014;79(2):809-13.
Monk KJ, Rubin BD, Keene JC, Katz DB. Licking microstructure reveals rapid attenuation of neophobia. Chem Senses. 2014;39(3):203-13.
Schwartz AJ, Boduroglu A, Gutchess AH. Cross-Cultural Differences in Categorical Memory Errors. Cognitive science. 2014;38(5):997-1007.
Brear AG, Yoon J, Wojtyniak M, Sengupta P. Diverse Cell Type-Specific Mechanisms Localize G Protein-Coupled Receptors to Caenorhabditis elegans Sensory Cilia. Genetics. 2014;197(2):667-84.
Li Y, Guo F, Shen J, Rosbash M. PDF and cAMP enhance PER stability in Drosophila clock neurons. Proc Natl Acad Sci U S A. 2014;111(13):E1284-90.
Agon CA, Headrick M, Jafferis DL, Kasko S. Disk entanglement entropy for a Maxwell field. Phys Rev D. 2014;89(2).
Mecozzi VJ, Berman DE, Simoes S, Vetanovetz C, Awal MR, Patel VM, Schneider RT, Petsko GA, Ringe D, Small SA. Pharmacological chaperones stabilize retromer to limit APP processing. Nat Chem Biol. 2014;10(6):443-9. [story at Brandeis NOW]
Liu L, Werner M, Gershenson A. Collapse of a long axis: single molecule FRET and serpin equilibrium unfolding. Biochemistry. 2014;53(18):2903-14.
Zhang Y, Zhou N, Li N, Sun M, Kim D, Fraden S, Epstein IR, Xu B. Giant Volume Change of Active Gels under Continuous Flow. J Am Chem Soc. 2014;136(20):7341-7.
Linck R, Fu X, Lin J, Ouch C, Schefter A, Steffen W, Warren P, Nicastro D. Insights into the structure and function of ciliary and flagellar doublet microtubules: tektins, Ca2+-binding proteins and stable protofilaments. J Biol Chem. 2014;289(25):17427-44.
Naffin-Olivos JL, Georgieva M, Goldfarb N, Madan-Lala R, Dong L, Bizzell E, Valinetz E, Brandt GS, Yu S, Shabashvili DE, Ringe D, Dunn BM, Petsko GA, Rengarajan J. Mycobacterium tuberculosis Hip1 Modulates Macrophage Responses through Proteolysis of GroEL2. Plos Pathog. 2014;10(5):e1004132
Maier JX, Blankenship ML, Barry NC, Richards SE, Katz DB. Stability and Flexibility of the Message Carried by Semiochemical Stimuli, as Revealed by Devaluation of Carbon Disulfide Followed by Social Transmission of Food Preference. Behav Neurosci. 2014;128(4):413-8
Gold JM, Aizenman A, Bond SM, Sekuler R. Memory and incidental learning for visual frozen noise sequences. Vision Res. 2014;99:19-36.
Goldin LJ, Ansher L, Berlin A, Cheng J, Kanopkin D, Khazan A, Kisivuli M, Lortie M, Bunker Peterson E, Pohl L, Porter S, Zeng V, Skogstrom T, Fragala MA, Myatt TA, Stewart JH, Allen JG. Indoor Air Quality Survey of Nail Salons in Boston. Journal of immigrant and minority health. 2014;16(3):508-14. [story at BrandeisNOW]
Mandapati K, Gorla SK, House AL, McKenney ES, Zhang M, Rao SN, Gollapalli DR, Mann BJ, Goldberg JB, Cuny GD, Glomski IJ, Hedstrom L. Repurposing Cryptosporidium inosine 5’-monophosphate dehydrogenase inhibitors as potential antibacterial agents. ACS Med Chem Lett. 2014;5(8):846-50
Boucher JI, Jacobowitz JR, Beckett BC, Classen S, Theobald DL. An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. eLife. 2014:e02304.
Abbadi S, Rodarte JJ, Abutaleb A, Lavell E, Smith CL, Ruff W, Schiller J, Olivi A, Levchenko A, Guerrero-Cazares H, Quinones-Hinojosa A. Glucose-6-phosphatase is a Key Metabolic Regulator of Glioblastoma Invasion. Molecular cancer research : MCR. 2014;12(11):1547-59
Palit CM, Graham DJ, Chen C-H, Foxman BM, Ozerov OV. Reduction of CO2 to Free CO by a Pd(I)-Pd(I) Dimer. Chem Commun (Camb). 2014;50(85):12840-2.
Lupis SB, Lerman M, Wolf JM. Anger responses to psychosocial stress predict heart rate and cortisol stress responses in men but not women. Psychoneuroendocrinology. 2014;49:84-95.
Avsaroglu B, Bronk G, Gordon-Messer S, Ham J, Bressan DA, Haber JE, Kondev J. Effect of chromosome tethering on nuclear organization in yeast. PLoS One. 2014;9(7):e102474.
Gaspar I, Yu YV, Cotton SL, Kim DH, Ephrussi A, Welte MA. Klar ensures thermal robustness of oskar localization by restraining RNP motility. J Cell Biol. 2014;206(2):199-215.
Akella SV, Mowitz A, Heymann M, Fraden S. An emulsion based technique to measure protein crystal nucleation rates of lysozyme. Cryst Growth Des. 2014:140728142416000.
Chi MW, Griffith LC, Vecsey CG. Larval Population Density Alters Adult Sleep in Wild-Type Drosophila melanogaster but Not in Amnesiac Mutant Flies. Brain sciences. 2014;4(3):453-70.
Ji C, Stockbridge RB, Miller C. Bacterial fluoride resistance, Fluc channels, and the weak acid accumulation effect. J Gen Physiol. 2014;144(3):257-61.
Jansen S, Collins A, Golden L, Sokolova O, Goode BL. Structure and mechanism of mouse cyclase-associated protein (CAP1) in regulating actin dynamics. J Biol Chem. 2014;289(44):30732-42.
Sugino K, Hempel CM, Okaty BW, Arnson HA, Kato S, Dani VS, Nelson SB. Cell-Type-Specific Repression by Methyl-CpG-Binding Protein 2 Is Biased toward Long Genes. J Neurosci. 2014;34(38):12877-83.
Henkin G, DeCamp SJ, Chen DT, Sanchez T, Dogic Z. Tunable dynamics of microtubule-based active isotropic gels. Philosophical transactions Series A, Mathematical, physical, and engineering sciences. 2014;372(2029).
Wang S, Sun Y, He A, Zheng C, Zheng X. Predictive value of phosphorylated mammalian target of rapamycin for disease-free survival in breast cancer patients receiving neoadjuvant chemotherapy. Oncology letters. 2014;8(6):2642-8.
Zhao F, Li J, Zhou N, Sakai J, Gao Y, Shi J, Goldman B, Browdy HM, Luo HR, Xu B. De Novo Chemoattractants Form Supramolecular Hydrogels for Immunomodulating Neutrophils In Vivo. Bioconjug Chem. 2014;25(12):2116-22.
Haim L, Hagberg A, Nagao R, Preska Steinberg A, Dolnik M, Epstein IR, Meron E. Fronts and patterns in a spatially forced CDIMA reaction. Phys Chem Chem Phys. 2014;16(47):26137-43.
Osborne AE, Sanchez JA, Solomon M, Stopa A, Wangh LJ, Sambanthamurthi R, Hayes KC. Palm Fruit Juice Mitigates AZT Mitochondrial Genotoxicity and Dose- Dependent Cytotoxicity. Journal of AIDS & Clinical Research. 2014;5(12).

2013

Roberts DH, Wardle JFC, Marchenko VV. The Structure and Linear Polarization of the Kiloparsec-scale Jet of the Quasar 3C 345. The Astronomical Journal. 2013;145(2):49. [science blog]
Dong X, Qu W, Ma S, Zhu Z, Zheng C, He A, Karlsson A, Xu K, Zheng X. Potent antitumoral effects of targeted promoter-driven oncolytic adenovirus armed with Dm-dNK for breast cancer in vitro and in vivo. Cancer Lett. 2013;328(1):95-103.
Mathialagan R, Kuppuswamy S, De Denko AT, Bezpalko MW, Foxman BM, Thomas CM. Metal-metal bonding in low-coordinate dicobalt complexes supported by phosphinoamide ligands. Inorg Chem. 2013;52(2):701-6.
Rice LM, Reis AH, Jr., Ronish B, Carver-Brown RK, Czajka JW, Gentile N, Kost G, Wangh LJ. Design of a single-tube, endpoint, linear-after-the-exponential-PCR assay for 17 pathogens associated with sepsis. J Appl Microbiol. 2013;114(2):457-69.
Gentile NL, Dillier AM, Williams GV, Ackers J, Reis AH, Rice LM, Wangh LJ, Czajka JW, Kost GJ. Verification of monoplex and multiplex linear-after-the-exponential PCR gene-specific sepsis assays using clinical isolates. Journal of Applied Microbiology. 2013;114(2):586-94.
Kim DH, Cotton SL, Manna D, Welte M. Novel isoforms of the transport regulator klar. PLoS One. 2013;8(2):e55070.
Palacci J, Sacanna S, Steinberg AP, Pine DJ, Chaikin PM. Living Crystals of Light-Activated Colloidal Surfers. Science. 2013;339(6122):936-40.
Gorla SK, Kavitha M, Zhang M, Chin JE, Liu X, Striepen B, Makowska-Grzyska M, Kim Y, Joachimiak A, Hedstrom L, Cuny GD. Optimization of Benzoxazole-Based Inhibitors of Cryptosporidium parvum Inosine 5′-Monophosphate Dehydrogenase. J Med Chem. 2013;56(10):4028-43.
Graziano BR, Jonasson EM, Pullen JG, Gould CJ, Goode BL. Ligand-induced activation of a formin-NPF pair leads to collaborative actin nucleation. J Cell Biol. 2013;201(4):595-611.
Zeng M, Kuzirian MS, Harper L, Paradis S, Nakayama T, Lau NC. Organic small hairpin RNAs (OshR): a Do-It-Yourself platform for transgene-based gene silencing. Methods. 2013;63(2):101-9.
Li JX, Yoshida T, Monk KJ, Katz DB. Lateral Hypothalamus Contains Two Types of Palatability-Related Taste Responses with Distinct Dynamics. J Neurosci. 2013;33(22):9462-73. [science blog]
Zhang N, Dong X, Sun Y, Cai X, Zheng C, He A, Xu K, Zheng X. Cytotoxic effects of adenovirus- and lentivirus-mediated expression of Drosophila melanogaster deoxyribonucleoside kinase on Bcap37 breast cancer cells. Oncology reports. 2013;29(3):960-6.
Kuang Y, Yuan D, Zhang Y, Kao A, Du XW, Xu B. Interactions between cellular proteins and morphologically different nanoscale aggregates of small molecules. Rsc Adv. 2013;3(21):7704-7.
Rosenberg MW, Kato CM, Carson KMP, Matsunaga NM, Arao RF, Doss EJ, McCracken CL, Meng LZ, Chen Y, Laub WU, Fuss M, Tanyi JA. Circumferential or sectored beam arrangements for stereotactic body radiation therapy (SBRT) of primary lung tumors: Effect on target and normal-structure dose-volume metrics. Medical Dosimetry. 2013;38(4):407-12.
Pan BF, Pierre S, Bezpalko MW, Napoline JW, Foxman BM, Thomas CM. Isolation of N-Heterocyclic Alkyl Intermediates en Route to Transition Metal N-Heterocyclic Carbene Complexes: Insight into a C-H Activation Mechanism. Organometallics. 2013;32(2):704-10.
Allen JG, Sumner AL, Nishioka MG, Vallarino J, Turner DJ, Saltman HK, Spengler JD. Air concentrations of PBDEs on in-flight airplanes and assessment of flight crew inhalation exposure. Journal of exposure science & environmental epidemiology. 2013;23(4):337-42.
Ni L, Bronk P, Chang EC, Lowell AM, Flam JO, Panzano VC, Theobald DL, Griffith LC, Garrity PA. A gustatory receptor paralogue controls rapid warmth avoidance in Drosophila. Nature. 2013;500(7464):580-4. [story at BrandeisNOW]
Steele JW, Ju S, Lachenmayer ML, Liken J, Stock A, Kim SH, Delgado LM, Alfaro IE, Bernales S, Verdile G, Bharadwaj P, Gupta V, Barr R, Friss A, Dolios G, Wang R, Ringe D, Protter AA, Martins RN, Ehrlich ME, Yue Z, Petsko GA, Gandy S. Latrepirdine stimulates autophagy and reduces accumulation of alpha-synuclein in cells and in mouse brain. Molecular psychiatry. 2013;18(8):882-8. [science blog]
Steele JW, Lachenmayer ML, Ju S, Stock A, Liken J, Kim SH, Delgado LM, Alfaro IE, Bernales S, Verdile G, Bharadwaj P, Gupta V, Barr R, Friss A, Dolios G, Wang R, Ringe D, Fraser P, Westaway D, St George-Hyslop PH, Szabo P, Relkin NR, Buxbaum JD, Glabe CG, Protter AA, Martins RN, Ehrlich ME, Petsko GA, Yue Z, Gandy S. Latrepirdine improves cognition and arrests progression of neuropathology in an Alzheimer’s mouse model. Molecular psychiatry. 2013;18(8):889-97.
Cassidy BS, Leshikar ED, Shih JY, Aizenman A, Gutchess AH. Valence-based age differences in medial prefrontal activity during impression formation. Soc Neurosci. 2013;8(5):462-73.
Colton G, Leshikar ED, Gutchess AH. Age differences in neural response to stereotype threat and resiliency for self-referenced information. Frontiers in human neuroscience. 2013;7:537.
Jia Y, Mak P-I, Massey C, Martins RP, Wangh LJ. Construction of a Microfluidic Chip for LATE-PCR Amplification and Detection of Single-Stranded DNA using Dried-Down Reagents. Lab on a Chip. 2013;13(23):4635-41.
Edayathumangalam R, Wu R, Garcia R, Wang Y, Wang W, Kreinbring CA, Bach A, Liao J, Stone TA, Terwilliger TC, Hoang QQ, Belitsky BR, Petsko GA, Ringe D, Liu D. Crystal structure of Bacillus subtilis GabR, an autorepressor and transcriptional activator of gabT. Proc Natl Acad Sci U S A. 2013;110(44):17820-5.
Millar PR, Serbun SJ, Vadalia A, Gutchess AH. Cross-cultural differences in memory specificity. Culture and Brain. 2013;1(2-4):138-57.
Goeritz ML, Bowers MR, Slepian B, Marder E. Neuropilar projections of the anterior gastric receptor neuron in the stomatogastric ganglion of the jonah crab, Cancer borealis. PLoS One. 2013;8(12):e79306.
Napoline JW, Krogman JP, Shi R, Kuppuswamy S, Bezpalko MW, Foxman BM, Thomas CM. Activation of E-H and E-E (E = S, O) Bonds by Heterobimetallic Zr/Co Complexes: Evidence for Both One- and Two-Electron Processes. Eur J Inorg Chem. 2013;2013(22-23):3874-82.
Rovenpor DR, Skogsberg NJ, Isaacowitz DM. The choices we make: an examination of situation selection in younger and older adults. Psychol Aging. 2013;28(2):365-76.
Dotiwala F, Eapen VV, Harrison JC, Arbel-Eden A, Ranade V, Yoshida S, Haber JE. DNA damage checkpoint triggers autophagy to regulate the initiation of anaphase. Proc Natl Acad Sci U S A. 2013;110(1):E41-9.
Tewari S, Dichter M, Chakraborty B. Signatures of incipient jamming in collisional hopper flows. Soft Matter. 2013;9(20):5016-24.
Haber JE, Braberg H, Wu Q, Alexander R, Haase J, Ryan C, Lipkin-Moore Z, Franks-Skiba KE, Johnson T, Shales M, Lenstra TL, Holstege FC, Johnson JR, Bloom K, Krogan NJ. Systematic triple-mutant analysis uncovers functional connectivity between pathways involved in chromosome regulation. Cell reports. 2013;3(6):2168-78.

2012

Kuppuswamy S, Cooper BG, Bezpalko MW, Foxman BM, Powers TM, Thomas CM. Synthesis and Structural Characterization of High Spin M/Cu (M = Mn, Fe) Heterobimetallic and Fe/Cu(2) Trimetallic Phosphinoamides. Inorg Chem. 2012 Feb 6;51(3):1866-73.
Gilron R, Gutchess AH. Remembering first impressions: Effects of intentionality and diagnosticity on subsequent memory. Cogn Affect Behav Neurosci. 2012;12(1):85-98.
Feldman D, Nagao R, Bansagi Jr T, Epstein IR, Dolnik M. Turing patterns in the chlorine dioxide-iodine-malonic acid reaction with square spatial periodic forcing. Phys. Chem. Chem. Phys., 2012,14, 6577-6583.
McCandlish SR, Baskaran A, Hagan MF. Spontaneous segregation of self-propelled particles with different motilities. Soft Matter. 2012;8(8):2527-34. [arXiv] [movies]
Liu C, Minari T, Li Y, Kumatami A, Lee MV, Pan SHA, Takimiya K, Tsukagoshi K. Direct formation of organic semiconducting single crystals by solvent vapor annealing on a polymer base film. J. Mater. Chem., 2012, 22, 8462-8469
Tang LS, Taylor AL, Rinberg A, Marder E. Robustness of a rhythmic circuit to short- and long-term temperature changes. J Neurosci. 2012;32(29):10075-85.
Sadacca BF, Rothwax JT, Katz DB. Sodium concentration coding gives way to evaluative coding in cortex and amygdala. J Neurosci. 2012;32(29):9999-10011.
Piette CE, Baez-Santiago MA, Reid EE, Katz DB, Moran A. Inactivation of basolateral amygdala specifically eliminates palatability-related information in cortical sensory responses. J Neurosci. 2012;32(29):9981-91
Pan B, Xu Z, Bezpalko MW, Foxman BM, Thomas CM. N-heterocyclic phosphenium ligands as sterically and electronically-tunable isolobal analogues of nitrosyls. Inorg Chem. 2012;51(7):4170-9.
Heuser T, Barber CF, Lin J, Krell J, Rebesco M, Porter ME, Nicastro D. Cryoelectron tomography reveals doublet-specific structures and unique interactions in the I1 dynein. Proc Natl Acad Sci U S A. 2012;109(30):E2067-76.
Rice JE, Reis AH, Jr., Rice LM, Carver-Brown RK, Wangh LJ. Fluorescent signatures for variable DNA sequences. Nucl. Acids Res. (2012) doi: 10.1093/nar/gks731 .
Bradley S, Narayanan S, Rosbash M. NAT1/DAP5/p97 and atypical translational control in the Drosophila Circadian Oscillator. Genetics. 2012;192(3):943-57.
Callan R, He JY, Headrick M. Strong subadditivity and the covariant holographic entanglement entropy formula. J High Energy Phys. 2012(6):81.
Trott AR, Donelson NC, Griffith LC, Ejima A. Song choice is modulated by female movement in Drosophila males. PLoS ONE 7(9):e46025.doi:10.1371/journal.pone.0046025
Elhanany-Tamir H, Yu YV, Shnayder M, Jain A, Welte M, Volk T. Organelle positioning in muscles requires cooperation between two KASH proteins and microtubules. J Cell Biol. 2012;198(5):833-46.
Estevez AO, Mueller CL, Morgan KL, Szewczyk NJ, Teece L, Miranda-Vizuete A, Estevez M. Selenium induces cholinergic motor neuron degeneration in Caenorhabditis elegans. Neurotoxicology. 2012;33(5):1021-32.
Kang K, Panzano VC, Chang EC, Ni L, Dainis AM, Jenkins AM, Regna K, Muskavitch MA, Garrity PA. Modulation of TRPA1 thermal sensitivity enables sensory discrimination in Drosophila. Nature. 2012;481(7379):76-80. [science blog]
Clemens JM, Ritter NJ, Roy A, Miller JM, Van Hooser SD. The laminar development of direction selectivity in ferret visual cortex. J Neurosci. 2012;32(50):18177-85.
Carver-Brown RK, Reis AH, Jr., Rice LM, Czajka JW, Wangh LJ. Design and Construction of a Single-Tube, LATE-PCR, Multiplex Endpoint Assay with Lights-On/Lights-Off Probes for the Detection of Pathogens Associated with Sepsis. Journal of pathogens. 2012;2012:424808.
Ozisik AP, Harrington KI. The effects of tags on the evolution of honest signaling. Proceedings of the fourteenth international conference on Genetic and evolutionary computation conference companion; Philadelphia, Pennsylvania, USA. 2330834: ACM; 2012. p. 345-52.
Makowska-Grzyska M, Kim Y, Wu R, Wilton R, Gollapalli DR, Wang XK, Zhang R, Jedrzejczak R, Mack JC, Maltseva N, Mulligan R, Binkowski TA, Gornicki P, Kuhn ML, Anderson WF, Hedstrom L, Joachimiak A. Bacillus anthracis inosine 5′-monophosphate dehydrogenase in action: the first bacterial series of structures of phosphate ion-, substrate-, and product-bound complexes. Biochemistry. 2012;51(31):6148-63.
Broderick R, Fishman L, Kleinbock D, Reich A, Weiss B. The set of badly approximable vectors is strongly C-1 incompressible. Math Proc Cambridge. 2012;153:319-39
Evers DA, Bluestein AH, Foxman BM, Thomas CM. Synthesis and investigation of the metal-metal interactions in early/late heterobimetallic complexes linking group 5 imido fragments to Co(I). Dalton Trans. 2012;41(26):8111-5.

2011

Day GS, Pan B, Kellenberger DL, Foxman BM, Thomas CM. Guilty as charged: non-innocent behavior by a pincer ligand featuring a central cationic phosphenium donor. Chem Commun (Camb). 2011;47(12):3634-6.
Brown JH, Senthil Kumar VS, O’Neall-Hennessey E, Reshetnikova L, Robinson H, Nguyen-McCarty M, Szent-Gyorgyi AG, Cohen C. Visualizing key hinges and a potential major source of compliance in the lever arm of myosin. Proc Natl Acad Sci U S A. 2011;108(1):114-9. [science blog]
Treacy DJ, Sankaran SM, Gordon-Messer S, Saly D, Miller R, Isaac SR, Kosinski-Collins MS. Implementation of a project-based molecular biology laboratory emphasizing protein structure-function relationships in a large introductory biology laboratory course. CBE Life Sci Educ. 2011;10(1):18-24.
Ronish B, Hakhverdyan M, Stahl K, Belak S, Leblanc N, Wangh L. Design and verification of a highly reliable Linear-After-The-Exponential PCR (LATE-PCR) assay for the detection of African swine fever virus. J Virol Methods. 2011;172(1-2):8-15.
Seier T, Padgett DR, Zilberberg G, Sutera VA, Jr., Toha N, Lovett ST. Insights into Mutagenesis Using Escherichia coli Chromosomal lacZ Strains that Enable Detection of a Wide Spectrum of Mutational Events. Genetics 2011; 188:247-2622. [science blog]
Pulver SR, Hornstein NJ, Land BL, Johnson BR. Optogenetics in the teaching laboratory: using channelrhodopsin-2 to study the neural basis of behavior and synaptic physiology in Drosophila. Adv Physiol Educ. 2011;35(1):82-91.
Kim JA, Hicks WM, Li J, Tay SY, Haber JE. Protein phosphatases Pph3, Ptc2, and Ptc3 play redundant roles in DNA double strand break repair by homologous recombination. Mol Cell Biol. 2011;31:507-16. [science blog]
Herzfeld J, Rand D, Matsuki Y, Daviso E, Mak-Jurkauskas M, Mamajanov I. Molecular Structure of Humin and Melanoidin via Solid State NMR. J Phys Chem B. 2011;115(19):5741-5. [science blog]
Szabo TM, Chen R, Goeritz ML, Maloney RT, Tang LS, Li L, Marder E. Distribution and physiological effects of B-type allatostatins (myoinhibitory peptides, MIPs) in the stomatogastric nervous system of the crab, Cancer borealis. J Comp Neurol. 2011;519:2658-76.
Setty VN, Zhou W, Foxman BM, Thomas CM. Subtle Differences Between Zr and Hf in Early/Late Heterobimetallic Complexes with Cobalt. Inorg Chem. 2011 May 16;50(10):4647-55.
Huacuja R, Graham DJ, Fafard CM, Chen CH, Foxman BM, Herbert DE, Alliger G, Thomas CM, Ozerov OV. Reactivity of a Pd(I)-Pd(I) Dimer with O₂: Monohapto Pd Superoxide and Dipalladium Peroxide in Equilibrium. Journal of the American Chemical Society. 2011;133(11):3820-3.
Ahlen S, Battat JBR, Caldwell T, Deaconu C, Dujmic D, Fedus W, Fisher P, Golub F, Henderson S, Inglis A, Kaboth A, Kohse G, Lanza R, Lee A, Lopez J, Monroe J, Sahin T, Sciolla G, Skvorodnev N, Tomita H, Wellenstein H, Wolfe I, Yamamoto R, Yegoryan H, First dark matter search results from a surface run of the 10-L DMTPC directional dark matter detector. Phys Lett B. 2011;695(1-4):124-9.
Zhao F, Weitzel CS, Gao Y, Browdy HM, Shi J, Lin HC, Lovett ST, Xu B. β-Galactosidase-instructed formation of molecular nanofibers and a hydrogel. Nanoscale. 2011 Jul;3(7):2859-61.
Dolnik M, Bansagi T, Ansari S, Valent I, Epstein IR. Locking of Turing patterns in the chlorine dioxide-iodine-malonic acid reaction with one-dimensional spatial periodic forcing. Phys Chem Chem Phys. 2011;13(27):12578-83.
Slawson JB, Kuklin EA, Ejima A, Mukherjee K, Ostrovsky L, Griffith LC. Central Regulation of Locomotor Behavior of Drosophila melanogaster Depends on a CASK Isoform Containing CaMK-like and L27 Domains. Genetics. 2011;187(1):171-84. [science blog]
Beverly M, Anbil S, Sengupta P. Degeneracy and Neuromodulation among Thermosensory Neurons Contribute to Robust Thermosensory Behaviors in Caenorhabditis elegans. J Neurosci. 2011;31(32):11718-27. [science blog]
Reeves, D., Cheveralls, K., and Kondev, J. (2011). Regulation of biochemical reaction rates by flexible tethers. Phys Rev E Stat Nonlin Soft Matter Phys. 2011;84(2-1):021914.
Nicastro D, Fu X, Heuser T, Tso A, Porter ME, Linck RW. Cryo-electron tomography reveals conserved features of doublet microtubules in flagella. Proc Natl Acad Sci U S A. 2011;108(42):E845-53. [science blog]
Boggio KJ, Obasuyi E, Sugino K, Nelson SB, Agar NY, Agar JN. Recent advances in single-cell MALDI mass spectrometry imaging and potential clinical impact. Expert review of proteomics. 2011;8(5):591-604.
Coic E, Martin JS, Ryu T, Tay SY, Kondev J, Haber JE. Dynamics of Homology Searching During Gene Conversion in Saccharomyces cerevisiae Revealed by Donor Competition. Genetics. 2011;189(4):1225-33.
Patton GC, Stenmark P, Gollapalli DR, Sevastik R, Kursula P, Flodin S, Schuler H, Swales CT, Eklund H, Himo F, Nordlund P, Hedstrom L. Cofactor mobility determines reaction outcome in the IMPDH and GMPR (beta-alpha)(8) barrel enzymes. Nat Chem Biol. 2011;7(12):950-8.
Bower GC, Bolatto A, Ford EB, Fries A, Kalas P, Sanchez K, Sanderbeck P, Viscomi V. Radio Interferometric Planet Search. Ii. Constraints on Sub-Jupiter-Mass Companions to Gj 896a. Astrophys J. 2011;740(1).
Abruzzi KC, Rodriguez J, Menet JS, Desrochers J, Zadina A, Luo W, Tkachev S, Rosbash M. Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression. Genes Dev. 2011;25(22):2374-86.
Demott JC, Surawatanawong P, Barnett SM, Chen CH, Foxman BM, Ozerov OV. Experimental and computational exploration of the dynamic behavior of (PNP)BF(2), a boron compound supported by an amido/bis(phosphine) pincer ligand. Dalton Trans. 2011;40(43):11562-70.
Neseliler S, Narayanan D, Fortis-Santiago Y, Katz DB, Birren SJ. Genetically induced cholinergic hyper-innervation enhances taste learning. Front Syst Neurosci. 2011;5:97.
Puri M, Gatard S, Smith DA, Ozerov OV. Competition Studies of Oxidative Addition of Aryl Halides to the (PNP)Rh Fragment. Organometallics. 2011;30(9):2472-82.
Sanhueza M, Fernandez-Villalobos G, Stein IS, Kasumova G, Zhang P, Bayer KU, Otmakhov N, Hell JW, Lisman J. Role of the CaMKII/NMDA Receptor Complex in the Maintenance of Synaptic Strength. J Neurosci. 2011;31(25):9170-8. [story at Brandeis NOW]
MacPherson IS, Temme JS, Habeshian S, Felczak K, Pankiewicz K, Hedstrom L, Krauss IJ. Multivalent glycocluster design through directed evolution. Angew Chem Int Ed Engl. 2011;50(47):11238-42 [science blog]
Ju S, Tardiff DF, Han H, Divya K, Zhong Q, Maquat LE, Bosco DA, Hayward LJ, Brown RH, Jr., Lindquist S, Ringe D, Petsko GA. A yeast model of FUS/TLS-dependent cytotoxicity. PLoS Biol. 2011;9(4):e1001052. [science blog]
Hamami A, Serbun SJ, Gutchess AH. Self-referencing enhances memory specificity with age. Psychology and aging. 2011;26(3):636-46.
Pan SH, Recht D, Charnvanichborikarn S, Williams JS, Aziz MJ. Enhanced visible and near-infrared optical absorption in silicon supersaturated with chalcogens. Appl Phys Lett. 2011;98(12).
Hoskins AA, Friedman LJ, Gallagher SS, Crawford DJ, Anderson EG, Wombacher R, Ramirez N, Cornish VW, Gelles J, Moore MJ. Ordered and dynamic assembly of single spliceosomes. Science. 2011;331(6022):1289-95.
Pappa HM, Saslowsky TM, Filip-Dhima R, DiFabio D, Lahsinoui HH, Akkad A, Grand RJ, Gordon CM. Efficacy and harms of nasal calcitonin in improving bone density in young patients with inflammatory bowel disease: a randomized, placebo-controlled, double-blind trial. Am J Gastroenterol. 2011;106(8):1527-43.
Campbell NR, Sun B, Singh RP, Deng L. Cinchona alkaloid catalyzed enantioselective amination of alpha,beta-unsaturated ketones: an asymmetric approach to Delta-pyrazolines. Advanced synthesis & catalysis. 2011;353(17):3123-8.
Zhao F, Gao Y, Shi J, Browdy HM, Xu B. Novel anisotropic supramolecular hydrogel with high stability over a wide pH range. Langmuir. 2011;27(4):1510-2.

2010

Agar NY, Kowalski JM, Kowalski PJ, Wong JH, Agar JN. Tissue preparation for the in situ MALDI MS imaging of proteins, lipids, and small molecules at cellular resolution. Methods Mol Biol 2010;656:415-31.
Chaudhry F, Little K, Talarico L, Quintero-Monzon O, Goode BL. A central role for the WH2 domain of Srv2/CAP in recharging actin monomers to drive actin turnover in vitro and in vivo. Cytoskeleton (Hoboken) 2010;67(2):120-33.
Fortis-Santiago Y, Rodwin BA, Neseliler S, Piette CE, Katz DB. State dependence of olfactory perception as a function of taste cortical inactivation. Nat Neurosci 2010;13(2):158-9.
Hicks WM, Kim M, Haber JE. Increased mutagenesis and unique mutation signature associated with mitotic gene conversion. Science 2010;329(5987):82-5.
Jia Y, Hartshorn C, Hartung O, Wangh LJ. Heat shock memory in preimplantation mouse embryos. Fertil Steril 2010;93(8):2760-3.
Tang LS, Goeritz ML, Caplan JS, Taylor AL, Fisek M, Marder E. Precise temperature compensation of phase in a rhythmic motor pattern. PLoS Biol 2010;8(8). [full text in PubMed Central]
Romm, I.K., Gordon-Messer, S., & Kosinski-Collins, M.S. 2010. “Educating Young Educators: A Pedagogical Internship for Undergraduate Teaching Assistants.” C.B.E. Life Sci. Educ. 9: 80-86.
Cooper BG, Fafard CM, Foxman BM, Thomas CM. Electronic Factors Affecting Metal-Metal Interactions in Early/Late Heterobimetallics: Substituent Effects in Zirconium/Platinum Bis(phosphinoamide) Complexes. Organometallics. 2010;29(21):5179-86.
Murphy NA, Lehrfeld JM, Isaacowitz DM. Recognition of posed and spontaneous dynamic smiles in young and older adults. Psychol Aging. 2010;25(4):811-21.
Wiggins PA, Cheveralls KC, Martin JS, Lintner R, Kondev J. Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament. Proc Natl Acad Sci U S A. 2010;107(11):4991-5.
Roberts DH, Wardle JFC, Bell MR, Mallory MR, Marchenko VV, Sanderbeck PU. Structure and Magnetic Fields in the Precessing Jet System Ss 433. Ii. Intrinsic Brightness of the Jets. Astrophys J. 2010;719(2):1918-25.
Bansagi T, Jr., Ansari S, Epstein IR, Dolnik M. Rearrangement dynamics of fishbonelike Turing patterns generated by spatial periodic forcing. Phys Rev E Stat Nonlin Soft Matter Phys. 2010;81(6 Pt 2):066207.
Engelhardt N, Nelson AE, Walsh JR. Apparent CPT violation in neutrino oscillation experiments. Phys Rev D. 2010;81(11).
Gregor LC, Chen CH, Fafard CM, Fan L, Guo C, Foxman BM, Gusev DG, Ozerov OV. Heterolytic splitting of H-X bonds at a cationic (PNP)Pd center. Dalton Trans. 2010;39(13):3195-202.
Josephine HR, Ravichandran KR, Hedstrom L. The Cys319 loop modulates the transition between dehydrogenase and hydrolase conformations in inosine 5′-monophosphate dehydrogenase. Biochemistry. 2010;49(50):10674-81.
Erickson MA, Maramara LA, Lisman J. A single brief burst induces GluR1-dependent associative short-term potentiation: a potential mechanism for short-term memory. J Cogn Neurosci. 2010;22(11):2530-40.
Lydeard JR, Lipkin-Moore Z, Jain S, Eapen VV, Haber JE. Sgs1 and exo1 redundantly inhibit break-induced replication and de novo telomere addition at broken chromosome ends. Plos Genet. 2010;6(5):e1000973.
Lydeard JR, Lipkin-Moore Z, Sheu YJ, Stillman B, Burgers PM, Haber JE. Break-induced replication requires all essential DNA replication factors except those specific for pre-RC assembly. Genes Dev. 2010;24(11):1133-44.
Chaabo F, Pronczuk A, Maslova E, Hayes K. Nutritional correlates and dynamics of diabetes in the Nile rat (Arvicanthis niloticus): a novel model for diet-induced type 2 diabetes and the metabolic syndrome. Nutr Metab (Lond). 2010;7:29.
Felice C, Ye S, Qu D. Nafion−Montmorillonite Nanocomposite Membrane for the Effective Reduction of Fuel Crossover. Industrial & Engineering Chemistry Research. 2010;49(4):1514-9.

2009

Quintero-Monzon O, Jonasson EM, Bertling E, Talarico L, Chaudhry F, Sihvo M, et al. Reconstitution and dissection of the 600-kDa Srv2/CAP complex: roles for oligomerization and cofilin-actin binding in driving actin turnover. J Biol Chem. 2009;284(16):10923-34. [full text in PubMed Central]
Pulver SR, Pashkovski SL, Hornstein NJ, Garrity PA, Griffith LC. Temporal dynamics of neuronal activation by Channelrhodopsin-2 and TRPA1 determine behavioral output in Drosophila larvae. J Neurophysiol. 2009;101(6):3075-88.
Persky NS, Ferullo DJ, Cooper DL, Moore HR, Lovett ST. The ObgE/CgtA GTPase influences the stringent response to amino acid starvation in Escherichia coli. Mol Microbiol. 2009;73(2):253-66.
Ou SA, Chang E, Lee S, So K, Wu CT, Morris JR. Effects of chromosomal rearrangements on transvection at the yellow gene of Drosophila melanogaster. Genetics. 2009;183(2):483-96. [full text in PubMed Central]
Molt KL, Sutera VA, Moore KK, Lovett ST. A role for nonessential domain II of initiator protein, DnaA, in replication control. Genetics. 2009;183(1):39-49. (full text in PubMed Central]
Hornstein NJ, Pulver SR, Griffith LC. Channelrhodopsin2 mediated stimulation of synaptic potentials at Drosophila neuromuscular junctions. J Vis Exp. 2009(25).
Greenwood BP, Forman SI, Rowe GT, Chen CH, Foxman BM, Thomas CM. Multielectron redox activity facilitated by metal-metal interactions in early/late heterobimetallics: Co/Zr complexes supported by phosphinoamide ligands. Inorg Chem. 2009;48(13):6251-60.
Heuser T, Raytchev M, Krell J, Porter ME, Nicastro D. The dynein regulatory complex is the nexin link and a major regulatory node in cilia and flagella. J Cell Biol. 2009;187(6):921-33. [full text in PubMed Central]
Fontanini A, Grossman SE, Figueroa JA, Katz DB. Distinct Subtypes of Basolateral Amygdala Taste Neurons Reflect Palatability and Reward. Journal of Neuroscience. 2009;29(8):2486-95.
Ferullo DJ, Cooper DL, Moore HR, Lovett ST. Cell cycle synchronization of Escherichia coli using the stringent response, with fluorescence labeling assays for DNA content and replication. Methods. 2009;48(1):8-13.
Dore JJ, Dewitt JC, Setty N, Donald MD, Joo E, Chesarone MA, et al. Multiple Signaling Pathways Converge to Regulate Bone-Morphogenetic-Protein-Dependent Glial Gene Expression. Dev Neurosci. 2009;31(6):473-86.
Boettner DR, D’Agostino JL, Torres OT, Daugherty-Clarke K, Uygur A, Reider A, Wendland B, Lemmon SK, Goode BL. The F-BAR protein Syp1 negatively regulates WASp-Arp2/3 complex activity during endocytic patch formation. Curr Biol 2009;19(23):1979-87. [full text in PubMed Central]
Agam Y, Hyun JS, Danker JF, Zhou F, Kahana MJ, Sekuler R. Early neural signatures of visual short-term memory. Neuroimage. 2009;44(2):531-6.
Barry E, Beller D, Dogic Z. A model liquid crystalline system based on rodlike viruses with variable chirality and persistence length. Soft Matter. 2009;5(13):2563-70.
Huang F, Rotstein R, Fraden S, Kasza KE, Flynn NT. Phase behavior and rheology of attractive rod-like particles. Soft Matter. 2009;5(14):2766-71.
Gutchess AH, Indeck A. Cultural influences on memory. Prog Brain Res. 2009;178:137-50.
Galster M, Kahana MJ, Wilson HR, Sekuler R. Identity modulates short-term memory for facial emotion. Cogn Affect Behav Neurosci. 2009;9(4):412-26.
Osborne A, Reis AH, Bach L, Wangh LJ. Single-molecule LATE-PCR analysis of human mitochondrial genomic sequence variations. PLoS One. 2009;4(5):e5636.

2008

Xu D, Cobb G, Spellicy CJ, Bowne SJ, Daiger SP, Hedstrom L. Retinal isoforms of inosine 5′-monophosphate dehydrogenase type 1 are poor nucleic acid binding proteins. Arch Biochem Biophys. 2008;472(2):100-4. [full text in PubMed Central]
van der Linden AM, Wiener S, You YJ, Kim K, Avery L, Sengupta P. The EGL-4 PKG acts with KIN-29 salt-inducible kinase and protein kinase A to regulate chemoreceptor gene expression and sensory behaviors in Caenorhabditis elegans. Genetics. 2008;180(3):1475-91. [full text in PubMed Central]
Umejiego NN, Gollapalli D, Sharling L, Volftsun A, Lu J, Benjamin NN, et al. Targeting a prokaryotic protein in a eukaryotic pathogen: identification of lead compounds against cryptosporidiosis. Chem Biol. 2008;15(1):70-7. [full text in PubMed Central]
Rehm KJ, Deeg KE, Marder E. Developmental regulation of neuromodulator function in the stomatogastric ganglion of the lobster, Homarus americanus. J Neurosci. 2008;28(39):9828-39. [full text in PubMed Central]
Pochapsky SS, Sunshine JC, Pochapsky TC. Completing the circuit: direct-observe 13C,15N double-quantum spectroscopy permits sequential resonance assignments near a paramagnetic center in acireductone dioxygenase. J Am Chem Soc. 2008;130(7):2156-7. [full text in PubMed Central]
Mortimer SE, Xu D, McGrew D, Hamaguchi N, Lim HC, Bowne SJ, et al. IMP Dehydrogenase Type 1 Associates with Polyribosomes Translating Rhodopsin mRNA. J Biol Chem. 2008;283(52):36354-60. [full text in PubMed Central]
Kadener S, Menet JS, Schoer R, Rosbash M. Circadian transcription contributes to core period determination in Drosophila. PLoS Biol. 2008;6(5):e119. [full text in PubMed Central]
Habecker BA, Bilimoria P, Linick C, Gritman K, Lorentz CU, Woodward W, et al. Regulation of cardiac innervation and function via the p75 neurotrophin receptor. Auton Neurosci-Basic. 2008;140(1-2):40-8.
Grossman SE, Fontanini A, Wieskopf JS, Katz DB. Learning-related plasticity of temporal coding in simultaneously recorded amygdala-cortical ensembles. J Neurosci. 2008;28(11):2864-73.
Ferri SL, Bohm RA, Lincicome HE, Hall JC, Villella A. fruitless Gene products truncated of their male-like qualities promote neural and behavioral maleness in Drosophila if these proteins are produced in the right places at the right times. J Neurogenet. 2008;22(1):17-55.
Danker JF, Hwang GM, Gauthier L, Geller A, Kahana MJ, Sekuler R. Characterizing the ERP Old-New effect in a short-term memory task. Psychophysiology. 2008;45(5):784-93.
Coic E, Feldman T, Landman AS, Haber JE. Mechanisms of Rad52-independent spontaneous and UV-induced mitotic recombination in Saccharomyces cerevisiae. Genetics. 2008;179(1):199-211. [full text in PubMed Central]
Chai SC, Ju T, Dang M, Goldsmith RB, Maroney MJ, Pochapsky TC. Characterization of Metal Binding in the Active Sites of Acireductone Dioxygenase Isoforms from Klebsiella ATCC 8724. Biochemistry. 2008;47(8):2428-38.
Caras ML, Mackenzie K, Rodwin B, Katz DB. Investigating the motivational mechanism of altered saline consumption following 5-HT-sub(1a) manipulation. Behavioral neuroscience. 2008;122(2):407-15.
Ataie NJ, Hoang QQ, Zahniser MP, Tu Y, Milne A, Petsko GA, Ringe D. Zinc coordination geometry and ligand binding affinity: the structural and kinetic analysis of the second-shell serine 228 residue and the methionine 180 residue of the aminopeptidase from Vibrio proteolyticus. Biochemistry. 2008;47(29):7673-83.
Roberts DH, Wardle JFC, Lipnick SL, Selesnick PL, Slutsky S. Structure and magnetic fields in the precessing jet system SS 433. I. Multifrequency imaging from 1998. Astrophys J. 2008;676(1):584-93.
Aefsky S, Amelung C, Bensinger J, Blocker C, Dushkin A, Gardner M, Hashemi K, Henry E, Kaplan B, Keselman P, Ketchum M, Landgraf U, Ostapchuk A, Rothberg J, Schricker A, Skvorodnev N, Wellenstein H. The optical alignment system of the ATLAS muon spectrometer endcaps. J Instrum. 2008;3
Goodman ER, Platt R, Bass R, Onderdonk AB, Yokoe DS, Huang SS. Impact of an environmental cleaning intervention on the presence of methicillin-resistant Staphylococcus aureus and vancomycin-resistant enterococci on surfaces in intensive care unit rooms. Infection control and hospital epidemiology. 2008;29(7):593-9
Lu X, Liu Y, Sun B, Cindric B, Deng L. Catalytic enantioselective peroxidation of alpha,beta-unsaturated ketones. J Am Chem Soc. 2008;130(26):8134-5.

2007

Zhou F, Wong V, Sekuler R. Multi-sensory integration of spatio-temporal segmentation cues: one plus one does not always equal two. Exp Brain Res. 2007;180(4):641-54.
Visscher KM, Kaplan E, Kahana MJ, Sekuler R. Auditory short-term memory behaves like visual short-term memory. PLoS Biol. 2007;5(3):e56. [full text in PubMed Central]
Rosbash M, Bradley S, Kadener S, Li Y, Luo W, Menet JS, Nagoshi E, Palm K, Schoer R, Shang Y, Tang A. Transcriptional feedback and definition of the circadian pacemaker in Drosophila and animals. Cold Spring Harbor symposia on quantitative biology. 2007;72:75-83.
Pochapsky TC, Ju T, OuYang B, Dang M, Beaulieu R, Pagani GM. Nickel in acireductone dioxygenase. In: Sigel A, Sigel H, Sigel RKO, editors. Nickel and Its Surprising Impact in Nature. Chichester, UK: John Wiley & Sons, Ltd.; 2007. p. 473-500.
Lin PY, Hinterneder JM, Rollor SR, Birren SJ. Non-cell-autonomous regulation of GABAergic neuron development by neurotrophins and the p75 receptor. J Neurosci. 2007;27(47):12787-96.
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Dutra BE, Sutera VA, Jr., Lovett ST. RecA-independent recombination is efficient but limited by exonucleases. Proc Natl Acad Sci U S A. 2007;104(1):216-21.
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Shim JU, Cristobal G, Link DR, Thorsen T, Jia Y, Piattelli K, Fraden S. Control and measurement of the phase behavior of aqueous solutions using microfluidics. J Am Chem Soc. 2007;129(28):8825-35.
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Giri R, Maugel N, Li JJ, Wang DH, Breazzano SP, Saunders LB, Yu JQ. Palladium-catalyzed methylation and arylation of sp2 and sp3 C-H bonds in simple carboxylic acids. J Am Chem Soc. 2007;129(12):3510-1.
Newman EL, Caplan JB, Kirschen MP, Korolev IO, Sekuler R, Kahana MJ. Learning your way around town: How virtual taxicab drivers learn to use both layout and landmark information. Cognition. 2007;104(2):231-53.
Gozlan I, Dor A, Farber B, Meirow D, Feinstein S, Levron J. Comparing intracytoplasmic sperm injection and in vitro fertilization in patients with single oocyte retrieval. Fertil Steril. 2007;87(3):515-8.

2006

Zadek B, Nimigean CM. Calcium-dependent gating of MthK, a prokaryotic potassium channel. J Gen Physiol. 2006;127(6):673-85. [full text in PubMed Central]
Wang Y, Fontanini A, Katz DB. Temporary basolateral amygdala lesions disrupt acquisition of socially transmitted food preferences in rats. Learn Mem. 2006;13(6):794-800.
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Shackelford D, Kenific C, Blusztajn A, Waxman S, Ren R. Targeted degradation of the AML1/MDS1/EVI1 oncoprotein by arsenic trioxide. Cancer Res. 2006;66(23):11360-9.
Sanchez JA, Abramowitz JD, Salk JJ, Reis AH, Jr., Rice JE, Pierce KE, et al. Two-temperature LATE-PCR endpoint genotyping. BMC Biotechnol. 2006;6:44.
Salk JJ, Sanchez JA, Pierce KE, Rice JE, Soares KC, Wangh LJ. Direct amplification of single-stranded DNA for pyrosequencing using linear-after-the-exponential (LATE)-PCR. Anal Biochem. 2006;353(1):124-32.
Okada K, Ravi H, Smith EM, Goode BL. Aip1 and Cofilin Promote Rapid Turnover of Yeast Actin Patches and Cables: A Coordinated Mechanism for Severing and Capping Filaments. Mol Biol Cell. 2006.
Kuhlman A, Little D, Sekuler R. An interactive test of serial behavior: age and practice alter executive function. J Clin Exp Neuropsychol. 2006;28(1):126-44.
Ju T, Goldsmith RB, Chai SC, Maroney MJ, Pochapsky SS, Pochapsky TC. One protein, two enzymes revisited: a structural entropy switch interconverts the two isoforms of acireductone dioxygenase. J Mol Biol. 2006;363(4):823-34.
Goldfless SJ, Morag AS, Belisle KA, Sutera VA, Jr., Lovett ST. DNA Repeat Rearrangements Mediated by DnaK-Dependent Replication Fork Repair. Mol Cell. 2006;21(5):595-604.
Dutra BE, Lovett ST. Cis and trans-acting effects on a mutational hotspot involving a replication template switch. J Mol Biol. 2006;356(2):300-11.
Bloustine J, Virmani T, Thurston GM, Fraden S. Light scattering and phase behavior of lysozyme-poly(ethylene glycol) mixtures. Phys Rev Lett. 2006;96(8):087803.
Oberdorf R, Ferguson A, Jacobsen JL, Kondev J. Secondary structures in long compact polymers. Phys Rev E Stat Nonlin Soft Matter Phys. 2006;74(5 Pt 1):051801
Giri R, Wasa M, Breazzano SP, Yu JQ. Converting gem-dimethyl groups into cyclopropanes via Pd-catalyzed sequential C-H activation and radical cyclization. Org Lett. 2006;8(25):5685-8.
Sederberg PB, Gauthier LV, Terushkin V, Miller JF, Barnathan JA, Kahana MJ. Oscillatory correlates of the primacy effect in episodic memory. Neuroimage. 2006;32(3):1422-31.

2005

Villella A, Ferri SL, Krystal JD, Hall JC. Functional analysis of fruitless gene expression by transgenic manipulations of Drosophila courtship. Proc Natl Acad Sci U S A. 2005.
Stone ME, Grimes BS, Katz DB. Hippocampal inactivation enhances taste learning. Learn Mem. 2005;12(6):579-86.
Sekuler R, Kahana MJ, McLaughlin C, Golomb J, Wingfield A. Preservation of episodic visual recognition memory in aging. Exp Aging Res. 2005;31(1):1-13.
Pulver SR, Bucher D, Simon DJ, Marder E. Constant amplitude of postsynaptic responses for single presynaptic action potentials but not bursting input during growth of an identified neuromuscular junction in the lobster, Homarus americanus. J Neurobiol. 2005;62(1):47-61.
Otmakhova NA, Lewey J, Asrican B, Lisman JE. Inhibition of perforant path input to the CA1 region by serotonin and noradrenaline. J Neurophysiol. 2005;94(2):1413-22.
Malkova A, Naylor ML, Yamaguchi M, Ira G, Haber JE. RAD51-dependent break-induced replication differs in kinetics and checkpoint responses from RAD51-mediated gene conversion. Mol Cell Biol. 2005;25(3):933-44.
Kim K, Colosimo ME, Yeung H, Sengupta P. The UNC-3 Olf/EBF protein represses alternate neuronal programs to specify chemosensory neuron identity. Dev Biol. 2005;286(1):136-48.
Hwang G, Jacobs J, Geller A, Danker J, Sekuler R, Kahana MJ. EEG correlates of verbal and nonverbal working memory. Behav Brain Funct. 2005;1:20.
Hartshorn C, Anshelevich A, Wangh LJ. Rapid, single-tube method for quantitative preparation and analysis of RNA and DNA in samples as small as one cell. BMC Biotechnol. 2005;5(1):2.
Hartshorn C, Anshelevich A, Wangh LJ. Laser zona drilling does not induce hsp70i transcription in blastomeres of eight-cell mouse embryos. Fertil Steril. 2005;84(5):1547-50.
Guo Y, Jangi S, Welte MA. Organelle-specific Control of Intracellular Transport: Distinctly Targeted Isoforms of the Regulator Klar. Mol Biol Cell. 2005;16(3):1406-16.
Foti JJ, Schienda J, Sutera VA, Jr., Lovett ST. A bacterial G protein-mediated response to replication arrest. Mol Cell. 2005;17(4):549-60.
D’Aquino JA, Tetenbaum-Novatt J, White A, Berkovitch F, Ringe D. Mechanism of metal ion activation of the diphtheria toxin repressor DtxR. Proc Natl Acad Sci U S A. 2005;102(51):18408-13.
Greenberg M, Canter K, Mahler I, Tornheim A. Observation of magnetoreceptive behavior in a multicellular magnetotactic prokaryote in higher than geomagnetic fields. Biophys J. 2005;88(2):1496-9.
Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Phillips R. Transcriptional regulation by the numbers: models. Curr Opin Genet Dev. 2005;15(2):116-24.
Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Kuhlman T, Phillips R. Transcriptional regulation by the numbers: applications. Curr Opin Genet Dev. 2005;15(2):125-35.
Scott VJ, Celenligil-Cetin R, Ozerov OV. Room-temperature catalytic hydrodefluorination of C(sp3)-F bonds. J Am Chem Soc. 2005;127(9):2852-3. [story in C&E News]
Klein KA, Addis KM, Kahana MJ. A comparative analysis of serial and free recall. Mem Cognit. 2005;33(5):833-9.

2004

Zhang Y, Heinsen MH, Kostic M, Pagani GM, Riera TV, Perovic I, Hedstrom L, Snider BB, Pochapsky TC. Analogs of 1-phosphonooxy-2,2-dihydroxy-3-oxo-5-(methylthio)pentane, an acyclic intermediate in the methionine salvage pathway: a new preparation and characterization of activity with E1 enolase/phosphatase from Klebsiella oxytoca. Bioorg Med Chem. 2004;12(14):3847-55.
Wolf-Watz M, Thai V, Henzler-Wildman K, Hadjipavlou G, Eisenmesser EZ, Kern D. Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair. Nat Struct Mol Biol. 2004.
Wilson MA, Amour CV, Collins JL, Ringe D, Petsko GA. The 1.8-A resolution crystal structure of YDR533Cp from Saccharomyces cerevisiae: A member of the DJ-1/ThiJ/PfpI superfamily. Proc Natl Acad Sci U S A. 2004;101(6):1531-6.
Tolic-Norrelykke SF, Engh AM, Landick R, Gelles J. Diversity in the rates of transcript elongation by single RNA polymerase molecules. Journal of Biological Chemistry. 2004;279(5):3292-9.
Otmakhov N, Tao-Cheng JH, Carpenter S, Asrican B, Dosemeci A, Reese TS, et al. Persistent accumulation of calcium/calmodulin-dependent protein kinase II in dendritic spines after induction of NMDA receptor-dependent chemical long-term potentiation. J Neurosci. 2004;24(42):9324-31.
Otmakhov N, Khibnik L, Otmakhova N, Carpenter S, Riahi S, Asrican B, et al. Forskolin-induced LTP in the CA1 hippocampal region is NMDA receptor dependent. J Neurophysiol. 2004;91(5):1955-62.
Moseley JB, Sagot I, Manning AL, Xu Y, Eck MJ, Pellman D, et al. A conserved mechanism for Bni1- and mDia1-induced actin assembly and dual regulation of Bni1 by Bud6 and profilin. Mol Biol Cell. 2004;15(2):896-907. [full text in PubMed Central]
McLean JE, Hamaguchi N, Belenky P, Mortimer SE, Stanton M, Hedstrom L. Inosine 5′-monophosphate dehydrogenase binds nucleic acids in vitro and in vivo. Biochem J. 2004;379(Pt 2):243-51.
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Malkova A, Swanson J, German M, McCusker JH, Housworth EA, Stahl FW, et al. Gene conversion and crossing over along the 405-kb left arm of Saccharomyces cerevisiae chromosome VII. Genetics. 2004;168(1):49-63.
Mahadevan A, Lappe J, Rhyne RT, Cruz-Bermudez ND, Marder E, Goy MF. Nitric oxide inhibits the rate and strength of cardiac contractions in the lobster Homarus americanus by acting on the cardiac ganglion. J Neurosci. 2004;24(11):2813-24.
Guillen Schlippe YV, Riera TV, Seyedsayamdost MR, Hedstrom L. Substitution of the conserved Arg-Tyr Dyad selectively disrupts the hydrolysis phase of the IMP dehydrogenase reaction. Biochemistry. 2004;43(15):4511-21.
McKinney RA, Glatt SM, Williams SR. Allometric length-weight relationships for benthic prey of aquatic wildlife in coastal marine habitats. Wildlife Biology. 2004;10(4):241-9.

2003

Zhou Y, Reddy S, Murrey H, Fei H, Levitan IB. Monomeric 14-3-3 protein is sufficient to modulate the activity of the Drosophila slowpoke calcium-dependent potassium channel. J Biol Chem. 2003;278(12):10073-80.
Snider BB, Lobera M, Marien TP. Stereocontrol in the EtAlCl(2)-induced cyclization of chiral gamma,delta-unsaturated methyl ketones to form cyclopentanones. J Org Chem. 2003;68(16):6451-4.
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Rodal AA, Manning AL, Goode BL, Drubin DG. Negative regulation of yeast WASp by two SH3 domain-containing proteins. Curr Biol. 2003;13(12):1000-8.
Richards KS, Simon DJ, Pulver SR, Beltz BS, Marder E. Serotonin in the developing stomatogastric system of the lobster, Homarus americanus. J Neurobiol. 2003;54(2):380-92.
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Nimigean CM, Chappie JS, Miller C. Electrostatic tuning of ion conductance in potassium channels. Biochemistry. 2003;42(31):9263-8.
Luther JA, Robie AA, Yarotsky J, Reina C, Marder E, Golowasch J. Golowasch J. Episodic bouts of activity accompany recovery of rhythmic output by a neuromodulator- and activity-deprived adult neural network. J Neurophysiol. 2003;90(4):2720-30.
Hedstrom L, Gan L, Schlippe YG, Riera T, Seyedsayamdost M. IMP dehydrogenase: the dynamics of drug selectivity. Nucleic Acids Res Suppl. 2003(3):97-8.
Getzoff ED, Gutwin KN, Genick UK. Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation. Nat Struct Biol. 2003;10(8):663-8.
Gan L, Seyedsayamdost MR, Shuto S, Matsuda A, Petsko GA, Hedstrom L. The immunosuppressive agent mizoribine monophosphate forms a transition state analogue complex with inosine monophosphate dehydrogenase. Biochemistry. 2003;42(4):857-63.
Balcer HI, Goodman AL, Rodal AA, Smith E, Kugler J, Heuser JE, et al. Coordinated Regulation of Actin Filament Turnover by a High-Molecular-Weight Srv2/CAP Complex, Cofilin, Profilin, and Aip1. Curr Biol. 2003;13(24):2159-69.
Allada R, Kadener S, Nandakumar N, Rosbash M. A recessive mutant of Drosophila Clock reveals a role in circadian rhythm amplitude. Embo J. 2003;22(13):3367-75.
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Caplan JB, Madsen JR, Schulze-Bonhage A, Aschenbrenner-Scheibe R, Newman EL, Kahana MJ. Human theta oscillations related to sensorimotor integration and spatial learning. J Neurosci. 2003;23(11):4726-36.
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Schwechter EM, Veliskova J, Velisek L. Correlation between extracellular glucose and seizure susceptibility in adult rats. Ann Neurol. 2003;53(1):91-101.
Sokolova O, Accardi A, Gutierrez D, Lau A, Rigney M, Grigorieff N. Conformational changes in the C terminus of Shaker K⁺ channel bound to the rat Kvbeta2-subunit. Proc Natl Acad Sci U S A. 2003;100(22):12607-12.
Jensen BA, Leeman RJ, Schlezinger JJ, Sherr DH. Aryl hydrocarbon receptor (AhR) agonists suppress interleukin-6 expression by bone marrow stromal cells: an immunotoxicology study. Environ Health. 2003;2(1):16.